Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30122.Seq
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 97 1e-20
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 92 4e-19
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 63 2e-10
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 31 0.63
01_04_0043 + 15375459-15377606 30 1.5
09_02_0575 + 10845261-10847057 28 7.7
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 96.7 bits (230), Expect = 1e-20
Identities = 46/88 (52%), Positives = 60/88 (68%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLN 160
Query: 535 DNVYQSLPTALLRRGFHKHNIICVEDLI 618
++ G KH+IIC+EDL+
Sbjct: 161 KQRIPLQNNKVIEEGLGKHDIICIEDLV 188
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL FV+RIRGIN + PK+ K L
Sbjct: 76 GGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 75 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 248
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKE 64
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 91.9 bits (218), Expect = 4e-19
Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 8/96 (8%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELV--------S 510
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+ +
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLN 159
Query: 511 NVDSPS*VDNVYQSLPTALLRRGFHKHNIICVEDLI 618
P + V + + L +G KH+IIC+EDL+
Sbjct: 160 KQRIPLTNNKVIEE--SWCLYQGLGKHDIICIEDLV 193
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV E KL FV+RIRGIN + PK+ K L
Sbjct: 75 GGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 471 GIPQLKECP*VSIKRGFAKLSGQRIPITSNSIVEK 575
G P LK + KRG+ KL+ QRIP+T+N ++E+
Sbjct: 139 GYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEE 173
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 87 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 248
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKE 63
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/87 (32%), Positives = 51/87 (58%)
Frame = +1
Query: 358 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*VD 537
+R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V++L+
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDK 163
Query: 538 NVYQSLPTALLRRGFHKHNIICVEDLI 618
+ L+ + ++ IIC+EDL+
Sbjct: 164 EPFPLTSNDLIEKALGEYGIICLEDLV 190
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 153 TLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEID 257
TL+ R+ IK KRE+F+R KE+RI+E ++D
Sbjct: 149 TLETRTDPIKLKREVFRRKR---KEHRIQELLQVD 180
>01_04_0043 + 15375459-15377606
Length = 715
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 658 RVLELFSNSEDLME*GPQHR*CCVYGSLFSTMLLEVIGIRCPLSLANPR 512
R+ LFS+ + L+ PQ + C+ +LF L +G CP++ A R
Sbjct: 234 RICRLFSSGDPLVASNPQIKDTCLSFALFKLQLRRFVG--CPIAEAGSR 280
>09_02_0575 + 10845261-10847057
Length = 598
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 544 IRCPLSLANPRLILTHGHSL---SWGIPKQCKARRYV 443
+RC L N +L+L SL SW + +C+ RRY+
Sbjct: 447 LRCIFLLNNWQLVLHRIESLDLPSWALIDRCRTRRYI 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,355,548
Number of Sequences: 37544
Number of extensions: 325797
Number of successful extensions: 758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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