Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30122.Seq
(669 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 94 9e-20
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 94 9e-20
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 94 9e-20
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 92 3e-19
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 92 3e-19
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 89 3e-18
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 49 2e-06
At3g52860.1 68416.m05825 expressed protein 31 0.92
At5g45310.1 68418.m05562 expressed protein 28 4.9
At1g58220.1 68414.m06612 myb family transcription factor contain... 28 4.9
At3g19620.1 68416.m02487 glycosyl hydrolase family 3 protein sim... 28 6.5
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 27 8.5
At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1 (... 27 8.5
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 8.5
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 93.9 bits (223), Expect = 9e-20
Identities = 45/88 (51%), Positives = 60/88 (68%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 535 DNVYQSLPTALLRRGFHKHNIICVEDLI 618
+++ +G KH IICVEDLI
Sbjct: 160 HQRTALTDNSIVDQGLGKHGIICVEDLI 187
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 75 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 66 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 245
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 246 DEI 254
+ I
Sbjct: 63 ELI 65
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 93.9 bits (223), Expect = 9e-20
Identities = 45/88 (51%), Positives = 60/88 (68%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 535 DNVYQSLPTALLRRGFHKHNIICVEDLI 618
+++ +G KH IICVEDLI
Sbjct: 160 HQRTALTDNSIVDQGLGKHGIICVEDLI 187
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 75 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 66 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 245
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 246 DEI 254
+ I
Sbjct: 63 ELI 65
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 93.9 bits (223), Expect = 9e-20
Identities = 45/88 (51%), Positives = 60/88 (68%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 535 DNVYQSLPTALLRRGFHKHNIICVEDLI 618
+++ +G KH IICVEDLI
Sbjct: 160 HQRTALTDNSIVDQGLGKHGIICVEDLI 187
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 75 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 66 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 245
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 246 DEI 254
+ I
Sbjct: 63 ELI 65
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 92.3 bits (219), Expect = 3e-19
Identities = 45/88 (51%), Positives = 59/88 (67%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLN 162
Query: 535 DNVYQSLPTALLRRGFHKHNIICVEDLI 618
+++ + KH IICVEDLI
Sbjct: 163 HQRIALTDNSIVDQALGKHGIICVEDLI 190
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 78 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 111
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 87 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 254
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + I
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELI 68
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 92.3 bits (219), Expect = 3e-19
Identities = 45/88 (51%), Positives = 59/88 (67%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLN 157
Query: 535 DNVYQSLPTALLRRGFHKHNIICVEDLI 618
+++ + KH IICVEDLI
Sbjct: 158 HQRIALTDNSIVDQALGKHGIICVEDLI 185
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 73 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 87 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 254
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + I
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELI 63
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 88.6 bits (210), Expect = 3e-18
Identities = 42/88 (47%), Positives = 58/88 (65%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +G+PNLKSV+EL+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLN 157
Query: 535 DNVYQSLPTALLRRGFHKHNIICVEDLI 618
+++ + KH IIC EDLI
Sbjct: 158 HQRIALTDNSIVEQALGKHGIICTEDLI 185
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 73 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +3
Query: 87 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 254
VPESVLK Q + + ++ IFKRAEQY KEY KE++ I
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELI 63
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/88 (25%), Positives = 44/88 (50%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +++L +L+ + GVF + + L +PY+ +GYPN KSV++L+
Sbjct: 102 KTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIE 161
Query: 535 DNVYQSLPTALLRRGFHKHNIICVEDLI 618
N ++ + +H I+ +EDL+
Sbjct: 162 GNPVPLTDNNIIEQALGEHKILGIEDLV 189
Score = 33.5 bits (73), Expect = 0.13
Identities = 44/186 (23%), Positives = 71/186 (38%), Gaps = 12/186 (6%)
Frame = +3
Query: 60 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 239
+E++K L +PE VLK + S KKK KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 240 ERDEI------------D*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV* 383
E D I P K +V GK + H ++ +++ +S +
Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122
Query: 384 TAPNKQWCVCTSE*GYCEYATYRRALHCLGIPQLKECP*VSIKRGFAKLSGQRIPITSNS 563
+ + + Y TY G P K + K+G + G +P+T N+
Sbjct: 123 ATDSLFQKLLKVQ----PYVTY-------GYPNDKSVKDLIYKKGCTIIEGNPVPLTDNN 171
Query: 564 IVEKRL 581
I+E+ L
Sbjct: 172 IIEQAL 177
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 296 PGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
P ++ L F+IRI+G N + PK+ + N L
Sbjct: 82 PVKSDLVFIIRIQGKNDMHPKTKRILNNL 110
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 144 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEID 257
++ LK + IKK +F+ +++ VKE K RDE++
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDELE 154
>At5g45310.1 68418.m05562 expressed protein
Length = 352
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 186 KREIFKRAEQYVKEYRIKERDEID*PDKH 272
++EI K + +KEYRI E+D + D+H
Sbjct: 107 RKEIEKNLREAIKEYRIMEQDLDELEDEH 135
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -1
Query: 666 KLLAYLNFSPTVKISWNEVLNTDNVVFMEASSQQCCWK*LVY 541
KLL + + K++WNE++ + A Q W+ L Y
Sbjct: 33 KLLQEMAYYAEAKMNWNELVKKTSTGITSAREYQLLWRHLAY 74
>At3g19620.1 68416.m02487 glycosyl hydrolase family 3 protein
similar to beta-xylosidase A GB:BAA28267 from
[Aspergillus oryzae]
Length = 781
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -2
Query: 629 RSHGMRSSTQIMLCLWKP 576
++HG+RS + ++L WKP
Sbjct: 677 KNHGLRSGSHVVLVFWKP 694
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 310 IGICHPNPWYQPSFTEVRKVL 372
+ CHPNP +PS V KVL
Sbjct: 586 LACCHPNPNQRPSMKTVLKVL 606
>At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1
(MTHFR1) identical to methylenetetrahydrofolate
reductase MTHFR1 [Arabidopsis thaliana] GI:5911425
Length = 592
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 310 IGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN-KATVNMLRIAEPYIAWGYP 480
IG +PW + + + +L +IN+ F+ +N + +VN + P I WG P
Sbjct: 403 IGNLKSSPWSELDGLQPETKIINEQLGKINSNGFLTINSQPSVNAAKSDSPAIGWGGP 460
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 387 QSKQLQNFTDF-GETWLIPRIRMTNANLASPGT 292
+ KQL+ + G TW+ P I +N ++ SPGT
Sbjct: 126 ERKQLRTHLIWTGGTWIQPEIEESNKSMFSPGT 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,449
Number of Sequences: 28952
Number of extensions: 269852
Number of successful extensions: 683
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -