Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30120.Seq
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 50 1e-06
07_01_0292 - 2117212-2117326,2117402-2117527,2117654-2117791,211... 31 0.50
10_08_0050 + 14469879-14470072,14470620-14471094 31 0.87
12_02_0625 - 21331209-21331273,21331364-21331555,21332348-213325... 29 2.0
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19... 29 2.7
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181... 29 3.5
04_04_1220 + 31843628-31844755 29 3.5
03_05_0355 - 23420410-23420548,23420643-23420794 28 4.6
08_01_0333 + 2977397-2977648,2978416-2978784,2980108-2980169,298... 27 8.1
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330... 27 8.1
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/36 (63%), Positives = 29/36 (80%)
Frame = -2
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 402
+Q+QADLLG PV+RP +E+TALGAA AG A+ VW
Sbjct: 446 MQIQADLLGSPVVRPADIETTALGAAYAAGLAVGVW 481
>07_01_0292 -
2117212-2117326,2117402-2117527,2117654-2117791,
2117904-2118323,2118421-2118591,2118701-2118880,
2118988-2119140,2119226-2119384,2119841-2120152,
2120285-2120452,2120851-2121050,2122207-2122589,
2123244-2123625
Length = 968
Score = 31.5 bits (68), Expect = 0.50
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 351 GKSRQECIGRWAGYCRGPHTHCA-TCDNGRPQGCTFHHEGTNDWYTQ*ISLHLHRTEFCA 527
G+S EC RW + +H A T + T +G N+W ++L HRT F
Sbjct: 369 GRSGAECESRWLNFDDPLISHNAWTAREEKRLILTVQQQGMNNWINIAVTLGTHRTPFQC 428
Query: 528 IPPSARS 548
+ RS
Sbjct: 429 LVRYQRS 435
>10_08_0050 + 14469879-14470072,14470620-14471094
Length = 222
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 293 GWTDTKNEHVNAENQIELLQFCRRD 219
G+T T ++ N+ N E+L+FCRR+
Sbjct: 101 GFTSTSSDRSNSGNSSEMLRFCRRE 125
>12_02_0625 -
21331209-21331273,21331364-21331555,21332348-21332558,
21333600-21333700,21333839-21333844,21333956-21334051,
21334485-21334497
Length = 227
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 512 SVQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPTTIPSPPAD 372
S +QADLLG PVIRP + AG ++ PP D
Sbjct: 38 SAHLQADLLGSPVIRPSEPLELQKQLELAAGIWIKAVDPAFGLPPVD 84
>05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-190404,
190584-190862,190941-191013,191331-191379,192169-192433,
192576-192631,192777-192845,193028-193139,193682-193771,
193955-194125,194449-194506,194970-195128,195379-195401
Length = 985
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 365 GMYRPVGWVLSWATHALRDLRQWPPPGL 448
G PVGW L + T L D PPP L
Sbjct: 926 GNNNPVGWPLRFLTPVLSDENSVPPPSL 953
>09_01_0117 +
1808669-1809181,1810038-1810059,1810170-1810223,
1810684-1810892
Length = 265
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -2
Query: 539 RRRDGAELSSVQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPTTIPSPPADTFLP 360
RRR + L + A G P+ + AA++ G A T+ P PP+ T P
Sbjct: 98 RRRHSSHLFAAPRHASTAGAPIATLRYSAVLGIEAAVLVGTARD--STSSPIPPSSTGAP 155
Query: 359 AL 354
+L
Sbjct: 156 SL 157
>04_04_1220 + 31843628-31844755
Length = 375
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 441 GGGHCRRSRNACVAHDNTQPT 379
GGGH R R +CV D+ +P+
Sbjct: 231 GGGHMRERRTSCVVVDDMEPS 251
>03_05_0355 - 23420410-23420548,23420643-23420794
Length = 96
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 415 ARPATMAAPRAVLSIMRGRMTGIPSKSACICTELS 519
ARP AA + + R+TG PS S C ELS
Sbjct: 50 ARPMAAAAMMGSPAAVAARLTGHPSASVRACCELS 84
>08_01_0333 +
2977397-2977648,2978416-2978784,2980108-2980169,
2980271-2980418
Length = 276
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 515 SSVQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPTTIPSPPADTFLPALT 351
+++ M A L+G P P M + +GAA+ G ++W + +PP A T
Sbjct: 218 AAIMMNA-LVGGPSTGPSMNPARTIGAAVATGEYRQMW-IYLVAPPLGAIAGAAT 270
>07_03_0251 +
15831712-15832127,15832203-15832344,15832692-15833056,
15833134-15833293,15833699-15834036,15834138-15834315,
15834454-15834987,15835176-15836291
Length = 1082
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 290 WTDTKNEHVNAENQIELLQFCRR 222
WT+ + +N ++ ELL+FCR+
Sbjct: 780 WTEAEQGRLNYKDSDELLEFCRK 802
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,737,823
Number of Sequences: 37544
Number of extensions: 363363
Number of successful extensions: 1008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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