Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30120.Seq
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   6.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   6.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 433 PLSQVAQCVCGPRQYPAHRPI 371
           P S +A CVC  +    HRP+
Sbjct: 97  PNSTIAVCVCMRKCPRRHRPV 117


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 112 TSKASLYFKKVLIYL*LCYNNVV 44
           TSKA ++ KKVL+ +   Y  +V
Sbjct: 56  TSKAGIHRKKVLLSVWWDYKGIV 78


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 112 TSKASLYFKKVLIYL*LCYNNVV 44
           TSKA ++ KKVL+ +   Y  +V
Sbjct: 178 TSKAGIHRKKVLLSVWWDYKGIV 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,892
Number of Sequences: 438
Number of extensions: 3971
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)