Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30119.Seq
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   2.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.1  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
          protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 18 RYTKLKITMAKPKG 59
          RY+KLK    KPKG
Sbjct: 26 RYSKLKRNWRKPKG 39


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 222 VDTRLNKFLWSRGSEMFP 275
           +D R  + +W+RG++  P
Sbjct: 428 LDIRTEELIWARGTKDIP 445


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 222 VDTRLNKFLWSRGSEMFP 275
           +D R  + +W+RG++  P
Sbjct: 518 LDIRTEELIWARGTKDIP 535


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,245
Number of Sequences: 438
Number of extensions: 2094
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)