Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30117.Seq
         (608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   1.5  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   6.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.1  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 267 VHQTAIARNNPRKAVRS 317
           +HQT I  NNPR   R+
Sbjct: 46  IHQTVIYHNNPRDPNRA 62


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 190 SGTVKWFNVKSGYGFINRNDTKKMCLC 270
           SGT+ W        FI +  T K  +C
Sbjct: 221 SGTIDWALPNKRTVFIRKGGTAKASMC 247


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 293 VTGDGSLMHKHIF 255
           VTG+  +MH+H F
Sbjct: 3   VTGNLGIMHRHCF 15


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 241  RNDTKKMCLCIRLPSPVTT 297
            + D    CL + LP PV T
Sbjct: 1321 KEDVTLPCLAVGLPPPVIT 1339


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 374 SSWCYWSRW*ASKRLTLCCRQAPWLPP 454
           S+WC +S + ++ R  +  +  P+L P
Sbjct: 145 STWCNYSAYSSASRHHVDHQPVPYLTP 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,475
Number of Sequences: 336
Number of extensions: 1858
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)