Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30117.Seq
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 45 4e-05
08_01_0202 - 1638978-1639571 43 2e-04
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 1.6
04_04_1582 - 34590698-34591199,34593849-34594690 29 2.9
03_01_0483 + 3689155-3689814 29 3.8
11_06_0416 + 23307984-23308281,23310083-23310900 28 5.0
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 5.0
08_01_0229 + 1834102-1834358,1834442-1834901 28 6.7
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 28 6.7
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 6.7
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665... 27 8.8
>02_01_0158 - 1103461-1104186
Length = 241
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +3
Query: 255 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVKG 416
ED+FVHQ++I + RS+ +GE VEFA+ E G +A VTGP G VKG
Sbjct: 30 EDLFVHQSSIKADG----FRSLAEGEQVEFAISESEDGRTKAVDVTGPDGSFVKG 80
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 178 AEKVSGTVKWFNVKSGYGFINRND 249
A + GTVKWFN G+GFI+ +D
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDD 27
>08_01_0202 - 1638978-1639571
Length = 197
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +3
Query: 255 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK-GSPYA 428
ED+FVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG + GS +
Sbjct: 29 EDLFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGALTGGSRPS 84
Query: 429 ADKRRGY 449
RGY
Sbjct: 85 GGGDRGY 91
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 178 AEKVSGTVKWFNVKSGYGFINRND 249
+E+V GTVKWF+ G+GFI +D
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDD 26
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 327 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 416
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 321 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 443
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>03_01_0483 + 3689155-3689814
Length = 219
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +3
Query: 321 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 446
GDG A AG G +AA G G +PV+GS +D RG
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 321 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 446
GDG + V G +AA G G +PV+GS +D RG
Sbjct: 81 GDGGGAD-PVRGSAGGSDAARGDGGGADPVRGSAGGSDAARG 121
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 477 HLDEGNIGGGSHGACLQHKVSLLLAHH 397
HLD+ N+ G +G + K+SLL A H
Sbjct: 89 HLDDPNVDGVRNGVRARFKISLLAAAH 115
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 392 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 264
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 75 GVIGERRWWQRW 40
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 366 GFEAAGVTGPGGEPVKGSPYAADKRRG 446
G EA G +GPGGE D RRG
Sbjct: 75 GVEAPGGSGPGGERTMAPANIDDSRRG 101
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +3
Query: 309 VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 422
VR G G A FAV G A G GGEP SP
Sbjct: 53 VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90
>04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,
6653569-6653766,6654485-6654568,6655175-6655920,
6656480-6657341
Length = 1194
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -3
Query: 504 VELLHRLVRHLDEGNIGGGSHGACLQHKVSLLL 406
++L+ RLVR L GG + A ++HK++L++
Sbjct: 951 IKLVDRLVRVLSPEGSGGSTRYAGMRHKLTLVI 983
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,387,859
Number of Sequences: 37544
Number of extensions: 242433
Number of successful extensions: 960
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -