Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30117.Seq
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 39 0.003
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 36 0.016
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 36 0.016
At3g45830.1 68416.m04960 expressed protein 29 1.8
At4g18740.2 68417.m02770 expressed protein 29 3.2
At4g18740.1 68417.m02769 expressed protein 29 3.2
At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr... 29 3.2
At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr... 29 3.2
At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr... 29 3.2
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 28 5.6
At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to ... 27 7.4
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin... 27 7.4
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin... 27 7.4
At2g39650.1 68415.m04862 expressed protein contains Pfam profile... 27 7.4
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 27 9.7
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 258 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK 413
++FVHQ++I + RS+ G+AVEFA+ G G +A VT PGG +K
Sbjct: 35 ELFVHQSSIVS----EGYRSLTVGDAVEFAITQGSDGKTKAVNVTAPGGGSLK 83
Score = 32.3 bits (70), Expect = 0.26
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 178 AEKVSGTVKWFNVKSGYGFINRND 249
A + +G V WFN GYGFI +D
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDD 31
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 36.3 bits (80), Expect = 0.016
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 255 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV-VAGEKGFEAAGVTGPGGEPVKGS 419
+D+FVHQ++I + RS+ EAVEF V + +A V+GP G PV+G+
Sbjct: 34 DDLFVHQSSIRS----EGFRSLAAEEAVEFEVEIDNNNRPKAIDVSGPDGAPVQGN 85
Score = 31.9 bits (69), Expect = 0.34
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 181 EKVSGTVKWFNVKSGYGFINRND 249
E+ G+VKWF+ + G+GFI +D
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDD 31
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 36.3 bits (80), Expect = 0.016
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 255 EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGS 419
+D+FVHQ++I + RS+ E+VEF V G +A V+GP G PV+G+
Sbjct: 38 DDLFVHQSSIRS----EGFRSLAAEESVEFDVEVDNSGRPKAIEVSGPDGAPVQGN 89
Score = 32.3 bits (70), Expect = 0.26
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 181 EKVSGTVKWFNVKSGYGFINRND 249
++ GTVKWF+ + G+GFI +D
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSD 35
>At3g45830.1 68416.m04960 expressed protein
Length = 1298
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +3
Query: 210 QRQEWIWFHQQE*HQEDVFVHQTAIARN--NPRK-AVRSVGDGEAVEFAVVAGEKGFEAA 380
+R+ W++ H+ QED T+ + P+K A + EAV A + E+ E
Sbjct: 1161 ERKLWVYLHRDR-EQEDFEDDGTSSTKKWKRPKKEAAEQTEEQEAVTVAFLGNEEQTE-- 1217
Query: 381 GVTGPGGEPVKGSPYAADKRRG 446
T G EP G P D +G
Sbjct: 1218 --TEMGSEPKTGEPTGLDGDQG 1237
>At4g18740.2 68417.m02770 expressed protein
Length = 214
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 205 WFNVKSGYGFINRNDTKKMCLCIRLPS 285
WF K G + + +KK C+C + PS
Sbjct: 57 WFQEKGGSSYTSMGRSKKGCVCCKKPS 83
>At4g18740.1 68417.m02769 expressed protein
Length = 245
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 205 WFNVKSGYGFINRNDTKKMCLCIRLPS 285
WF K G + + +KK C+C + PS
Sbjct: 57 WFQEKGGSSYTSMGRSKKGCVCCKKPS 83
>At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 315 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 461
S G+ + + GE G G+TG G EPVK KRRG R+Y
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKY 106
>At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 315 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 461
S G+ + + GE G G+TG G EPVK KRRG R+Y
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKY 106
>At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 315 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 461
S G+ + + GE G G+TG G EPVK KRRG R+Y
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKY 106
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 208 FNVKSGYGFINRNDTKKMCLCIRLPS 285
F S +GF+ + KK+C I+LPS
Sbjct: 623 FRAMSQHGFLGQLQDKKLCAVIQLPS 648
>At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 294
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 283 SPVTTHVRLCARSATERRWSLPWL 354
+PV T VR+C + +TE SLP++
Sbjct: 26 APVPTFVRICKKKSTEGFQSLPYV 49
>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
[Equus caballus] GI:5052355; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 579
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 66 GERRWWQRW*NTPRPLLDV 10
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
T2a [Homo sapiens] GI:2981198; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 541
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 66 GERRWWQRW*NTPRPLLDV 10
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At2g39650.1 68415.m04862 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 291
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -1
Query: 485 SSATLTREILAVVATALVCSIR*AFYWLTTGTSNTSCFKAFLPGNHGKLHRLSVADRA 312
S A E+L+VV T ++ + + +GT N SC + +L KL RLS D A
Sbjct: 73 SMAQHETEVLSVVRTLMLTIKEKDLHSVKSGTCNASCIRFYL----AKLLRLSGYDAA 126
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 178 AEKVSGTVKWFNVKSGYGFINRND 249
A + G V WF+ GYGFI +D
Sbjct: 8 AARSIGKVSWFSDGKGYGFITPDD 31
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,782,772
Number of Sequences: 28952
Number of extensions: 170264
Number of successful extensions: 561
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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