Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30115.Seq
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 118 4e-27
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 113 9e-26
08_02_0657 - 19749835-19751942,19753123-19753561 98 7e-21
10_08_0548 - 18685114-18685230,18685615-18685724,18685779-186858... 29 2.6
06_01_0057 - 483710-484309 29 3.5
10_07_0117 + 13028336-13028404,13029073-13029174,13031108-130313... 28 8.0
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 118 bits (284), Expect = 4e-27
Identities = 53/99 (53%), Positives = 68/99 (68%)
Frame = +2
Query: 215 LAQGQTPQGNRLHLLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 394
L +G+ + +L+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 395 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRG 511
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F+VRG
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRG 163
Score = 95.5 bits (227), Expect = 4e-20
Identities = 42/57 (73%), Positives = 50/57 (87%)
Frame = +1
Query: 511 GMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 681
GMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+GG RKQ+
Sbjct: 164 GMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVRKQM 219
Score = 94.7 bits (225), Expect = 6e-20
Identities = 43/67 (64%), Positives = 53/67 (79%)
Frame = +3
Query: 54 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 233
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 234 RKETVCI 254
RK+T+CI
Sbjct: 71 RKDTICI 77
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 113 bits (273), Expect = 9e-26
Identities = 51/99 (51%), Positives = 67/99 (67%)
Frame = +2
Query: 215 LAQGQTPQGNRLHLLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 394
L +G+ + +L+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 395 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRG 511
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F+VRG
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRG 163
Score = 98.3 bits (234), Expect = 5e-21
Identities = 47/67 (70%), Positives = 54/67 (80%)
Frame = +3
Query: 54 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 233
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 234 RKETVCI 254
RK+T+CI
Sbjct: 71 RKDTICI 77
Score = 95.5 bits (227), Expect = 4e-20
Identities = 42/57 (73%), Positives = 50/57 (87%)
Frame = +1
Query: 511 GMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 681
GMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+GG RKQ+
Sbjct: 164 GMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVRKQM 219
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 97.9 bits (233), Expect = 7e-21
Identities = 39/83 (46%), Positives = 58/83 (69%)
Frame = +2
Query: 263 DDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEV 442
D++CPD ++R+ D+V++ PCP+++ KRV + P DDSVEG++G+LFE
Sbjct: 84 DESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEGISGDLFEP 143
Query: 443 YLKPYFMEAYRPIHRDDTFMVRG 511
YLKPYFM+A RP+ + D F+VRG
Sbjct: 144 YLKPYFMDALRPVKKGDRFLVRG 166
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/58 (60%), Positives = 44/58 (75%), Gaps = 2/58 (3%)
Frame = +1
Query: 514 MRAVEFKVVETDPSPF-CIVAPDTVIHCD-GEPIKREEEEEALNAVGYDDIGGCRKQL 681
M AVEFKV++T+P+ IVA DT I CD G+P+KRE+EE L+ GYDD+GG RKQL
Sbjct: 168 MHAVEFKVMDTEPNNEPVIVAGDTEIFCDEGDPVKREDEER-LDGPGYDDVGGVRKQL 224
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 5/64 (7%)
Frame = +3
Query: 75 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 239
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 240 ETVC 251
E VC
Sbjct: 76 EAVC 79
>10_08_0548 -
18685114-18685230,18685615-18685724,18685779-18685802,
18686135-18686213,18686346-18686588,18686659-18686823,
18686960-18687037,18687185-18687231,18687319-18687379,
18687667-18687723,18688164-18688247,18689292-18689357,
18689447-18689574,18689693-18689885
Length = 483
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 534 FELDGAHAPRTMKVSSRW 481
F LDGAH+P +M++ ++W
Sbjct: 331 FYLDGAHSPESMEICAKW 348
>06_01_0057 - 483710-484309
Length = 199
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 79 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 225
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>10_07_0117 +
13028336-13028404,13029073-13029174,13031108-13031367,
13031813-13031882,13031935-13031966,13032736-13032823,
13033431-13033742,13033822-13033896,13034018-13034559,
13034936-13035044,13035713-13035892,13036243-13036404
Length = 666
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 371 YGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGACAPSSSKWSKQ 547
Y R+ + +D+ + + V L FM++Y PI +VRG PS++K S Q
Sbjct: 213 YSSRIAVSAVDNIIMVHQIDAKVVILYDVFMDSYAPISAPLPLLVRG--LPSNNKQSAQ 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,279,782
Number of Sequences: 37544
Number of extensions: 412189
Number of successful extensions: 1106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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