Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30115.Seq
(690 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 131 3e-30
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 131 3e-30
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 131 3e-30
AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing prot... 131 3e-30
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 131 3e-30
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 131 3e-30
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 108 2e-23
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 131 bits (316), Expect = 3e-30
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +2
Query: 254 LLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNL 433
+LSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNL
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNL 130
Query: 434 FEVYLKPYFMEAYRPIHRDDTFMVRG 511
FEVYLKPYF+EAYRPI + D F+VRG
Sbjct: 131 FEVYLKPYFLEAYRPIRKGDIFLVRG 156
Score = 117 bits (281), Expect = 5e-26
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = +1
Query: 511 GMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 681
GMRAVEFKVVET PSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGGCRKQL
Sbjct: 157 GMRAVEFKVVETHPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQL 213
Score = 106 bits (254), Expect = 9e-23
Identities = 50/67 (74%), Positives = 63/67 (94%)
Frame = +3
Query: 54 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 233
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 234 RKETVCI 254
R+E VCI
Sbjct: 64 RREAVCI 70
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 131 bits (316), Expect = 3e-30
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +2
Query: 254 LLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNL 433
+LSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNL
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNL 130
Query: 434 FEVYLKPYFMEAYRPIHRDDTFMVRG 511
FEVYLKPYF+EAYRPI + D F+VRG
Sbjct: 131 FEVYLKPYFLEAYRPIRKGDIFLVRG 156
Score = 120 bits (288), Expect = 6e-27
Identities = 52/57 (91%), Positives = 56/57 (98%)
Frame = +1
Query: 511 GMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 681
GMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGGCRKQL
Sbjct: 157 GMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQL 213
Score = 106 bits (254), Expect = 9e-23
Identities = 50/67 (74%), Positives = 63/67 (94%)
Frame = +3
Query: 54 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 233
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 234 RKETVCI 254
R+E VCI
Sbjct: 64 RREAVCI 70
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 131 bits (316), Expect = 3e-30
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +2
Query: 254 LLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNL 433
+LSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNL
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNL 130
Query: 434 FEVYLKPYFMEAYRPIHRDDTFMVRG 511
FEVYLKPYF+EAYRPI + D F+VRG
Sbjct: 131 FEVYLKPYFLEAYRPIRKGDIFLVRG 156
Score = 120 bits (288), Expect = 6e-27
Identities = 52/57 (91%), Positives = 56/57 (98%)
Frame = +1
Query: 511 GMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 681
GMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGGCRKQL
Sbjct: 157 GMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQL 213
Score = 106 bits (254), Expect = 9e-23
Identities = 50/67 (74%), Positives = 63/67 (94%)
Frame = +3
Query: 54 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 233
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 234 RKETVCI 254
R+E VCI
Sbjct: 64 RREAVCI 70
>AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing protein
protein.
Length = 307
Score = 131 bits (316), Expect = 3e-30
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +2
Query: 254 LLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNL 433
+LSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNL
Sbjct: 9 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNL 68
Query: 434 FEVYLKPYFMEAYRPIHRDDTFMVRG 511
FEVYLKPYF+EAYRPI + D F+VRG
Sbjct: 69 FEVYLKPYFLEAYRPIRKGDIFLVRG 94
Score = 120 bits (288), Expect = 6e-27
Identities = 52/57 (91%), Positives = 56/57 (98%)
Frame = +1
Query: 511 GMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 681
GMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGGCRKQL
Sbjct: 95 GMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQL 151
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 131 bits (316), Expect = 3e-30
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +2
Query: 254 LLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNL 433
+LSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNL
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNL 130
Query: 434 FEVYLKPYFMEAYRPIHRDDTFMVRG 511
FEVYLKPYF+EAYRPI + D F+VRG
Sbjct: 131 FEVYLKPYFLEAYRPIRKGDIFLVRG 156
Score = 120 bits (288), Expect = 6e-27
Identities = 52/57 (91%), Positives = 56/57 (98%)
Frame = +1
Query: 511 GMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 681
GMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGGCRKQL
Sbjct: 157 GMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQL 213
Score = 106 bits (254), Expect = 9e-23
Identities = 50/67 (74%), Positives = 63/67 (94%)
Frame = +3
Query: 54 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 233
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 234 RKETVCI 254
R+E VCI
Sbjct: 64 RREAVCI 70
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 131 bits (316), Expect = 3e-30
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +2
Query: 254 LLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNL 433
+LSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNL
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNL 130
Query: 434 FEVYLKPYFMEAYRPIHRDDTFMVRG 511
FEVYLKPYF+EAYRPI + D F+VRG
Sbjct: 131 FEVYLKPYFLEAYRPIRKGDIFLVRG 156
Score = 120 bits (288), Expect = 6e-27
Identities = 52/57 (91%), Positives = 56/57 (98%)
Frame = +1
Query: 511 GMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 681
GMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGGCRKQL
Sbjct: 157 GMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQL 213
Score = 106 bits (254), Expect = 9e-23
Identities = 50/67 (74%), Positives = 63/67 (94%)
Frame = +3
Query: 54 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 233
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 234 RKETVCI 254
R+E VCI
Sbjct: 64 RREAVCI 70
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 108 bits (259), Expect = 2e-23
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = +1
Query: 529 FKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 681
FKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN VGYDDIGGCRKQL
Sbjct: 1 FKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQL 51
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,367,304
Number of Sequences: 237096
Number of extensions: 2119874
Number of successful extensions: 4617
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4617
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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