Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30112.Seq
(446 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0831 - 21810002-21810319,21810423-21810573,21810660-218108... 31 0.42
04_03_0923 + 20843477-20845044,20846081-20846996 30 0.97
04_03_0772 - 19438910-19439209,19439692-19439828,19441334-194415... 28 3.0
06_01_0244 - 1844161-1844241,1844356-1844394,1844510-1844617,184... 28 3.9
04_03_0914 + 20788103-20789642,20790036-20790529 27 5.2
07_01_1132 + 10531922-10532136,10532307-10532433,10532945-105331... 27 6.9
06_03_0765 + 24421982-24422120,24422287-24422367,24422722-244229... 27 6.9
01_02_0099 + 11092529-11093140,11094153-11094424,11095378-110954... 27 6.9
12_02_0417 - 18896949-18897269,18897340-18897424,18899561-188996... 27 9.1
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471... 27 9.1
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 27 9.1
>07_03_0831 -
21810002-21810319,21810423-21810573,21810660-21810897,
21811011-21811221,21811336-21811559,21811696-21811806,
21813265-21813636,21813810-21814782
Length = 865
Score = 31.1 bits (67), Expect = 0.42
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 236 HSVTAFDSVFLLLRTESSSGSDIRWTVLSHSTQTTFPAARILL 108
H++T D L++ ++G+D+ W H T T P I L
Sbjct: 129 HTLTIRDDGNLVISGSDAAGTDVEWESFHHPTDTFVPGMEIAL 171
>04_03_0923 + 20843477-20845044,20846081-20846996
Length = 827
Score = 29.9 bits (64), Expect = 0.97
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = -1
Query: 275 ILRRASDSGLXYGHS-VTAFDSVFLLLRT------ESSSGSDIRWTVLSHSTQTTFPAAR 117
IL A+ S + H+ +TA D++ +LL SS+ S I W + T T FP+A+
Sbjct: 108 ILDHATKSIIWSTHANITAKDTIAILLNNGNLVLRSSSNSSIIFWQSFDYPTDTLFPSAK 167
Query: 116 I 114
I
Sbjct: 168 I 168
>04_03_0772 -
19438910-19439209,19439692-19439828,19441334-19441570,
19441948-19442149,19442761-19442858,19443082-19443665,
19443725-19443882
Length = 571
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 45 AMCILVYGNSEDDFCEIDSIEQEDPC 122
A C+ V G S DD CE ++ +D C
Sbjct: 83 AACLGVIGGSGDDLCEKAAVRYDDRC 108
>06_01_0244 -
1844161-1844241,1844356-1844394,1844510-1844617,
1844638-1844685,1845058-1845111,1845214-1845268,
1845442-1845522,1846238-1846615,1847196-1847401
Length = 349
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -2
Query: 220 SIPSFCCLGQSPVLALISDGQSSATVHKPPSLRHGS 113
++PS CCL SP S VHKPP R GS
Sbjct: 125 AVPSGCCLSSSP--------GSVIWVHKPPEGRRGS 152
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 27.5 bits (58), Expect = 5.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 203 LLRTESSSGSDIRWTVLSHSTQTTFPAARI 114
L+ T S+ S++ W + T T FP A++
Sbjct: 136 LILTNPSNSSEVLWQSFDYPTDTLFPRAKL 165
>07_01_1132 +
10531922-10532136,10532307-10532433,10532945-10533100,
10533755-10533847,10534010-10534090,10534205-10534276,
10534608-10534676,10534764-10534874,10535039-10535089
Length = 324
Score = 27.1 bits (57), Expect = 6.9
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = -2
Query: 280 ETFSAVLPTLVSXTDTP*QHSIPSFCCLGQSPVLALISDGQSSATVHKPPSLRHGSSCSM 101
++FS+ P L D IP C + Q P + D KP + ++
Sbjct: 139 QSFSSSFPHLFHDNDDHLPCLIP--CAIDQDPYFRMTCDVAPKLGFQKPSLIESRFFPAL 196
Query: 100 ESISQKSSSLFP*TKMHIAQNNK 32
+ S K S+ P + +++ N+K
Sbjct: 197 QGESTKMSASDPNSAIYVTDNSK 219
>06_03_0765 +
24421982-24422120,24422287-24422367,24422722-24422962,
24423078-24423171,24423513-24423729,24423818-24423909,
24424303-24424638
Length = 399
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 205 KKTESNAVTECPXKRPESEARRRMFLERLLQSIFDI*RSFRLSR 336
K+T +ECP + P+S + +R + IFD+ R + +R
Sbjct: 172 KRTAKPRGSECPEQLPDSSNAAKTDTDRNMSVIFDVLRKKKNAR 215
>01_02_0099 +
11092529-11093140,11094153-11094424,11095378-11095438,
11095553-11095622,11095645-11095901,11096466-11096639
Length = 481
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 99 SIEQEDPCRREGGLCTVAEDCPSD 170
S+E+ED C R GG VA DC D
Sbjct: 439 SMEKEDGCSRVGG--AVASDCVED 460
>12_02_0417 -
18896949-18897269,18897340-18897424,18899561-18899656,
18900418-18900476,18901285-18901359
Length = 211
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 181 LALISDGQSSATVHKPPSLRHGSSCSMESISQKSSSLFP 65
LA I+D Q T+ +P + HG+S + +FP
Sbjct: 89 LAAIADTQPQTTISRPQMVPHGASPGLGGQYMSQVPMFP 127
>11_06_0277 +
21843658-21845220,21846533-21846718,21847037-21847165,
21847256-21847415,21847846-21847955,21848038-21848247,
21848473-21848730,21848810-21848885,21849217-21849350,
21849928-21850007,21850265-21850316
Length = 985
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 39 FCAMCILVYGN-SEDDFCEIDSIEQE 113
FC + +L G DD CE++SI+ E
Sbjct: 565 FCCLKLLASGKLGNDDLCEVNSIDVE 590
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +3
Query: 81 DFCEIDSIEQEDPCRREGG--LCTVAEDCPSDIRARTGLC 194
D C + D C+ GG CT C R R+GLC
Sbjct: 562 DNCSKSAQGSTDFCKAHGGGKRCTWGTGCEKFARGRSGLC 601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,592,365
Number of Sequences: 37544
Number of extensions: 216405
Number of successful extensions: 709
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -