Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30111.Seq
(593 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 26 0.21
U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein. 22 3.4
U81038-1|AAB39355.1| 412|Tribolium castaneum transcription fact... 22 3.4
AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein. 22 3.4
AJ876407-1|CAI45288.1| 590|Tribolium castaneum phosphatase prot... 22 4.5
AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 21 7.8
AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 21 7.8
AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 21 7.8
AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 21 7.8
AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax pr... 21 7.8
AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 21 7.8
AF264695-1|AAG13009.1| 100|Tribolium castaneum cephalothorax pr... 21 7.8
AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 21 7.8
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 26.2 bits (55), Expect = 0.21
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 110 SENTKCNGSSGYSKHSKEL 166
SE T CNGS G S +EL
Sbjct: 300 SEKTLCNGSKGISPEQEEL 318
>U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein.
Length = 283
Score = 22.2 bits (45), Expect = 3.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 80 RQRCSYSRHFLLYF*HKIHFKIAVT 6
RQR +Y+RH +L + H+ +T
Sbjct: 235 RQRTAYTRHQILELEKEFHYNRYLT 259
>U81038-1|AAB39355.1| 412|Tribolium castaneum transcription factor
Deformed protein.
Length = 412
Score = 22.2 bits (45), Expect = 3.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 80 RQRCSYSRHFLLYF*HKIHFKIAVT 6
RQR +Y+RH +L + H+ +T
Sbjct: 235 RQRTAYTRHQILELEKEFHYNRYLT 259
>AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein.
Length = 412
Score = 22.2 bits (45), Expect = 3.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 80 RQRCSYSRHFLLYF*HKIHFKIAVT 6
RQR +Y+RH +L + H+ +T
Sbjct: 235 RQRTAYTRHQILELEKEFHYNRYLT 259
>AJ876407-1|CAI45288.1| 590|Tribolium castaneum phosphatase
protein.
Length = 590
Score = 21.8 bits (44), Expect = 4.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 51 KMSTIAAPLSVAGTRSCGDPVRTQNV 128
K+STIA L V TRS P T+ +
Sbjct: 36 KLSTIALALGVERTRSELIPFLTETI 61
>AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.0 bits (42), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 80 RQRCSYSRHFLLYF*HKIHFKIAVT 6
RQR SY+R+ L + HF +T
Sbjct: 222 RQRTSYTRYQTLELEKEFHFNRYLT 246
>AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.0 bits (42), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 80 RQRCSYSRHFLLYF*HKIHFKIAVT 6
RQR SY+R+ L + HF +T
Sbjct: 222 RQRTSYTRYQTLELEKEFHFNRYLT 246
>AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.0 bits (42), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 80 RQRCSYSRHFLLYF*HKIHFKIAVT 6
RQR SY+R+ L + HF +T
Sbjct: 222 RQRTSYTRYQTLELEKEFHFNRYLT 246
>AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax
protein.
Length = 297
Score = 21.0 bits (42), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 80 RQRCSYSRHFLLYF*HKIHFKIAVT 6
RQR SY+R+ L + HF +T
Sbjct: 222 RQRTSYTRYQTLELEKEFHFNRYLT 246
>AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax
protein.
Length = 268
Score = 21.0 bits (42), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 80 RQRCSYSRHFLLYF*HKIHFKIAVT 6
RQR SY+R+ L + HF +T
Sbjct: 178 RQRTSYTRYQTLELEKEFHFNRYLT 202
>AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein.
Length = 312
Score = 21.0 bits (42), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 80 RQRCSYSRHFLLYF*HKIHFKIAVT 6
RQR SY+R+ L + HF +T
Sbjct: 222 RQRTSYTRYQTLELEKEFHFNRYLT 246
>AF264695-1|AAG13009.1| 100|Tribolium castaneum cephalothorax
protein.
Length = 100
Score = 21.0 bits (42), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 80 RQRCSYSRHFLLYF*HKIHFKIAVT 6
RQR SY+R+ L + HF +T
Sbjct: 10 RQRTSYTRYQTLELEKEFHFNRYLT 34
>AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced
Scr protein.
Length = 312
Score = 21.0 bits (42), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 80 RQRCSYSRHFLLYF*HKIHFKIAVT 6
RQR SY+R+ L + HF +T
Sbjct: 222 RQRTSYTRYQTLELEKEFHFNRYLT 246
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,299
Number of Sequences: 336
Number of extensions: 2901
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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