Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30111.Seq
(593 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 89 3e-18
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 4e-16
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 1e-15
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 76 2e-14
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 70 2e-12
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 48 8e-06
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 45 4e-05
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 36 0.019
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 36 0.033
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 29 2.1
SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17) 29 2.8
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 28 4.9
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 28 6.5
SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 27 8.6
SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017) 27 8.6
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 88.6 bits (210), Expect = 3e-18
Identities = 37/72 (51%), Positives = 60/72 (83%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 424
+K++ +++PAAK+LVEL+++QD+EVGDGTTSV ++ +ELLK A++LV KIHP +I++G+
Sbjct: 68 LKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGW 127
Query: 425 RLACKEAVKYIQ 460
R + K A K ++
Sbjct: 128 RKSVKAAEKALE 139
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 2/36 (5%)
Frame = +3
Query: 150 NIVKSSLGPVGLDKML--VDDIGDVTVTNEGATILK 251
++VKS+LGP G+DK+L G++ VTN+GATILK
Sbjct: 34 DLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILK 69
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 469 HSNSRVTWQAVSDHTAKTTMSSKLIGADADFFSEMVVDA 585
HS+ ++ + A+TT+SSK++ D F+++ VDA
Sbjct: 145 HSSDPEKFREDLMNIARTTLSSKILVQHRDHFAKLAVDA 183
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 81.8 bits (193), Expect = 4e-16
Identities = 32/75 (42%), Positives = 56/75 (74%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 424
++ ++V+HPAAK ++E+++ QDEEVGDGTTSV+I+A E + A+ ++ ++HPT II+ Y
Sbjct: 9 LREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAY 68
Query: 425 RLACKEAVKYIQDNL 469
RLA + + ++ +
Sbjct: 69 RLAMDDMIDILKQQI 83
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 80.2 bits (189), Expect = 1e-15
Identities = 32/72 (44%), Positives = 54/72 (75%)
Frame = +2
Query: 254 VEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 433
++V+HPAAK ++E+++ QDEEVGDGTTSV+I+A E + A+ ++ ++HPT II+ YRLA
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 268
Query: 434 CKEAVKYIQDNL 469
+ + ++ +
Sbjct: 269 MDDMIDILKQQI 280
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 75.8 bits (178), Expect = 2e-14
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 3/77 (3%)
Frame = +2
Query: 254 VEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 433
+EV+H AK++VEL++ QD E+GDGTT VV++A LL++A++L+ IHP I GY LA
Sbjct: 79 MEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELA 138
Query: 434 CKEAVKY---IQDNLTV 475
K A+++ I DN V
Sbjct: 139 AKIALEHMDSIADNFPV 155
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = +3
Query: 114 RTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNEGATILKM 254
+ +++ +I+K+SLGP G+DKM+V G+VTVTN+GATIL M
Sbjct: 32 KQSHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGM 78
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/56 (53%), Positives = 46/56 (82%)
Frame = +2
Query: 293 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQ 460
L+++QD+EVGDGTTSV ++A+ELLK A++LV KIHP +I++G+R + K A K ++
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 57
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 514 AKTTMSSKLIGADADFFSEMVVDA 585
A+TT+SSK++ D F+++ VDA
Sbjct: 78 ARTTLSSKILVQHRDHFAKLAVDA 101
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 67.7 bits (158), Expect = 7e-12
Identities = 34/94 (36%), Positives = 59/94 (62%)
Frame = +2
Query: 239 HNIKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 418
+ ++N +++HP A ++ +A QD+ GDGTTS V+I ELLK AD V +HP +
Sbjct: 164 NGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTE 223
Query: 419 GYRLACKEAVKYIQDNLTVTVESLGRPSLITQPK 520
G+ +A K+A++ +++ + V+ E + R +LI K
Sbjct: 224 GFEVAKKKALEVLEE-VKVSRE-MDRDTLINVAK 255
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 111 VRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNEGATI 245
+R N+ + +++SLGP G+DKM+ GDVT+TN+GATI
Sbjct: 25 IRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +3
Query: 96 SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNEGATILKM 254
S G P N+ + V+++LGP G+DK++VD G T++N+GATI+ +
Sbjct: 651 SQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATIINL 703
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQDEE 316
I +++ HPAAK LV++A+ QD E
Sbjct: 701 INLLDIVHPAAKTLVDIAKSQDAE 724
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 153 IVKSSLGPVGLDKMLVDDIGDVTVTNEGATILK 251
I+K S GP GLD ML G++ +TN G+ IL+
Sbjct: 15 ILKKSFGPNGLDVMLRSSSGNILITNSGSMILE 47
>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
Length = 131
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +1
Query: 514 AKTTMSSKLIGADADFFSEMVVDA 585
A T +SSKLIG DFF+ M+VDA
Sbjct: 17 ANTALSSKLIGQQGDFFANMIVDA 40
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 505 DHTAKTTMSSKLIGADADFFSEMVVDA 585
+ A T +SSKLI +FF++MVVDA
Sbjct: 25 ERCAATALSSKLIATQKEFFAKMVVDA 51
>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 30.7 bits (66), Expect = 0.93
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 356 ELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNL 469
E + A+ ++ ++HPT II+ YRLA + + ++ +
Sbjct: 3 EFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQI 40
>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 236 CHNIKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSII 415
CH +N ++ HPA + LV + E V + A +L N DE + + S+
Sbjct: 933 CHRGENCKLRHPACRYLVRPENTRQEAVSIRPQNDAHSYAAILANRDETLDHALLNNSVA 992
Query: 416 S 418
S
Sbjct: 993 S 993
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Frame = -1
Query: 242 CGTFVS---DCNIPNIVNQHLIQTNWPKGALYYVCYSRCCHYILCSHWVSA----GSCPC 84
C +FV +PN + + T PKG Y C +C + C H + G+C C
Sbjct: 64 CQSFVGVTQGTTVPNAIEGEICNTRCPKGYYGYGCSKKCSN---CQHGATCDPVNGTCSC 120
>SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)
Length = 197
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 308 DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTVES 487
DE+V DG I+AAE + + + PTS+ +GY +A V+ I + + +
Sbjct: 98 DEDVPDGAP---IVAAEAVNSTSLRINCTTLPTSVANGYVIAFNVYVESIDGSHKLIEKK 154
Query: 488 LGRPSLI 508
G S++
Sbjct: 155 DGLTSVV 161
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 275 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 418
A+++ ++A +EE GDGTT+ ++A + V +P + S
Sbjct: 127 ARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEVSS 174
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 158 YYVCYSRCCHYILCSHWVSAGSCPCYRQRCSYSRHFLLYF*H 33
YY CY C +Y C ++ C CY C Y + Y+ H
Sbjct: 477 YYYCYCYCYYY--CYYY-----CYCYCYYCCYYCYCYYYYHH 511
>SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 1357
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 32 CVKNTIKNVDYSCTFVCSRDKILRRPSENTKCNGSSGYSK 151
CV+ T N + C CS + RR NT C G + Y++
Sbjct: 731 CVRQTYDNRKFIC---CSGRVVPRRFGRNTSCCGFTPYNR 767
>SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)
Length = 472
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = -1
Query: 242 CGTFVSDCNIPNIVNQHLIQTNWPKGALYYVCYSRCCHYILCSHWV 105
C +DCN L +G CY CC LC+++V
Sbjct: 388 CSVVSADCNENGTRCDRLTSVLKDRGLTLKNCYVNCCQGDLCNNFV 433
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,898,811
Number of Sequences: 59808
Number of extensions: 357944
Number of successful extensions: 817
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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