Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30111.Seq
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 130 9e-31
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 89 2e-18
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 78 4e-15
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 77 1e-14
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 74 8e-14
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 73 1e-13
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 68 4e-12
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 67 1e-11
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 57 8e-09
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 56 1e-08
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 43 1e-04
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 36 0.020
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 34 0.062
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 33 0.14
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 33 0.19
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 33 0.19
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 31 0.44
At2g16400.1 68415.m01877 homeodomain-containing protein 29 2.3
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 28 5.4
At3g50090.1 68416.m05476 exonuclease family protein contains exo... 27 9.4
At2g46640.1 68415.m05818 hypothetical protein and genefinder; e... 27 9.4
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 130 bits (313), Expect = 9e-31
Identities = 63/92 (68%), Positives = 76/92 (82%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 424
++ +EVEHPAAKVLVELA+LQD EVGDGTTSVVI+AAELLK A++LV+ KIHPTSIISGY
Sbjct: 65 LRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGY 124
Query: 425 RLACKEAVKYIQDNLTVTVESLGRPSLITQPK 520
RLA +E+ KYI++ L VE LG+ LI K
Sbjct: 125 RLAMRESCKYIEEKLVTKVEKLGKVPLINCAK 156
Score = 89.4 bits (212), Expect = 2e-18
Identities = 44/67 (65%), Positives = 50/67 (74%)
Frame = +3
Query: 54 MSTIAAPLSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNE 233
MS A ++G R G VRTQNVM NIVK+SLGPVGLDKMLVDDIGDVT+TN+
Sbjct: 1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60
Query: 234 GATILKM 254
GATIL+M
Sbjct: 61 GATILRM 67
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +1
Query: 514 AKTTMSSKLIGADADFFSEMVVDA 585
AKT+MSSKLI D+DFF+ +VV+A
Sbjct: 155 AKTSMSSKLISGDSDFFANLVVEA 178
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 89.4 bits (212), Expect = 2e-18
Identities = 37/63 (58%), Positives = 58/63 (92%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 424
+K++ +++PAAKVLV+++++QD+EVGDGTTSVV++A ELL+ A++LV +KIHP +II+GY
Sbjct: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGY 125
Query: 425 RLA 433
R+A
Sbjct: 126 RMA 128
Score = 40.7 bits (91), Expect = 7e-04
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +3
Query: 102 GDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIG---DVTVTNEGATILK 251
G+ R + + ++VKS+LGP G+DK+L G VTVTN+GATILK
Sbjct: 16 GERARMASFVGAMAISDLVKSTLGPKGMDKIL-QSTGRGHAVTVTNDGATILK 67
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 514 AKTTMSSKLIGADADFFSEMVVDA 585
A TT+ SK++ D + F+EM VDA
Sbjct: 158 AMTTLCSKILSQDKEHFAEMAVDA 181
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 78.2 bits (184), Expect = 4e-15
Identities = 34/82 (41%), Positives = 55/82 (67%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 424
+ +E++HPAAK+LV A+ Q EE+GDG + A ELL+NA+EL++ +HP+ IISGY
Sbjct: 73 VNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGY 132
Query: 425 RLACKEAVKYIQDNLTVTVESL 490
A +AV+ ++ + E++
Sbjct: 133 TKAVSKAVEILEQLVETGSETM 154
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +3
Query: 105 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNEGATIL 248
D +N+ I ++SLGP G++KM+++ + + VTN+ ATI+
Sbjct: 26 DEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 73
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/80 (43%), Positives = 57/80 (71%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 424
+K +++ HPAAK+LV++A+ QD EVGDGTT+VV++AAE LK A ++ +H ++I Y
Sbjct: 69 MKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSY 128
Query: 425 RLACKEAVKYIQDNLTVTVE 484
R A A+ +++ L V++E
Sbjct: 129 RTASTLAIAKVKE-LAVSIE 147
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = +3
Query: 96 SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNEGATILKM 254
S G N+ ++V+++LGP G+DK++ DD G VT++N+GATI+K+
Sbjct: 19 SQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKL 71
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 514 AKTTMSSKLIGADADFFSEMVVDA 585
A TT+SSKLIG + +FF+ MVVDA
Sbjct: 162 AATTLSSKLIGGEKEFFATMVVDA 185
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 73.7 bits (173), Expect = 8e-14
Identities = 32/88 (36%), Positives = 59/88 (67%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 424
++ ++V HPAAK ++EL++ QDEEVGDGTTSV+++A E+L A+ ++ HPT I Y
Sbjct: 65 LRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAY 124
Query: 425 RLACKEAVKYIQDNLTVTVESLGRPSLI 508
A ++++ + D + ++++ R ++
Sbjct: 125 IKALEDSIA-VLDKIAMSIDINDRSQVL 151
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +3
Query: 75 LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNEGATILK 251
LS + R G V N+ +I++++LGP + KML+D G + VTN+G IL+
Sbjct: 8 LSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILR 66
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 72.9 bits (171), Expect = 1e-13
Identities = 40/88 (45%), Positives = 52/88 (59%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 424
+ +EV PAAK+LVEL++ QD GDGTT+VV+IA LLK L+ IHPT I
Sbjct: 74 LNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSL 133
Query: 425 RLACKEAVKYIQDNLTVTVESLGRPSLI 508
AC +A+ I + V VE R SL+
Sbjct: 134 HKACGKAID-ILTAMAVPVELTDRDSLV 160
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +3
Query: 105 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNEGATILKMWKWSILLP 278
+ +R N+ + V++SLGP G+DKM+ G+V +TN+GATIL K +L P
Sbjct: 27 EDIRFANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILN--KMEVLQP 82
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 68.1 bits (159), Expect = 4e-12
Identities = 29/72 (40%), Positives = 51/72 (70%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 424
++ ++V++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY
Sbjct: 74 LEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGY 133
Query: 425 RLACKEAVKYIQ 460
+A + AV++++
Sbjct: 134 EMASRVAVEHLE 145
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/54 (46%), Positives = 34/54 (62%)
Frame = +3
Query: 90 TRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNEGATILK 251
TR G + N+ I++SSLGP G+DKML GD+T+TN+GATIL+
Sbjct: 22 TRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILE 75
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/69 (42%), Positives = 49/69 (71%)
Frame = +2
Query: 254 VEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 433
++V++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY +A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 434 CKEAVKYIQ 460
+ AV++++
Sbjct: 61 SRVAVEHLE 69
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 57.2 bits (132), Expect = 8e-09
Identities = 24/79 (30%), Positives = 47/79 (59%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 424
+K +++++P A ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 425 RLACKEAVKYIQDNLTVTV 481
+A + ++++ DN V
Sbjct: 123 EIAKRATLQFL-DNFKTPV 140
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 150 NIVKSSLGPVGLDKMLVDDIGDVTVTNEGATILK 251
+++KS+LGP G KMLV GD+ +T +G T+LK
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 56.4 bits (130), Expect = 1e-08
Identities = 23/79 (29%), Positives = 46/79 (58%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 424
+K +++++P A ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 425 RLACKEAVKYIQDNLTVTV 481
+A + ++++ T V
Sbjct: 123 EIAKRATLQFLDTFKTPVV 141
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 150 NIVKSSLGPVGLDKMLVDDIGDVTVTNEGATILK 251
+++KS+LGP G KMLV GD+ +T +G T+LK
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +2
Query: 260 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 439
+E+ A ++ E+A +E GDGTT+ +I+A E++K + + S+ +G K
Sbjct: 97 IENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVK 156
Query: 440 EAVKYIQ 460
E V+ +Q
Sbjct: 157 ELVRVLQ 163
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/67 (26%), Positives = 37/67 (55%)
Frame = +2
Query: 260 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 439
+E+ A ++ E+A ++ GDGTT+ I+A E++K+ V + +P S+ G +
Sbjct: 110 MENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQ 169
Query: 440 EAVKYIQ 460
++ +Q
Sbjct: 170 GLIEELQ 176
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 34.3 bits (75), Expect = 0.062
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 260 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 439
VE+ AK++ + A ++ GDGTT+ V++A L+ ++V +P I G K
Sbjct: 117 VENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTK 176
Query: 440 EAV 448
V
Sbjct: 177 ALV 179
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 260 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 439
VE+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 117 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 176
Query: 440 EAVKYIQ 460
V ++
Sbjct: 177 ALVNELK 183
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 260 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 439
VE+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 180
Query: 440 EAV 448
V
Sbjct: 181 ALV 183
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 260 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 439
VE+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 180
Query: 440 EAV 448
V
Sbjct: 181 ALV 183
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 245 IKNVEVEHPAAKVLVELAQLQ----DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSI 412
+K +E+E P V V+L + ++ GDG+T+ +I+A L+ +++ +P +
Sbjct: 96 LKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQV 155
Query: 413 ISGYRLACKEAV 448
G K V
Sbjct: 156 ARGIEKTTKALV 167
>At2g16400.1 68415.m01877 homeodomain-containing protein
Length = 482
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +1
Query: 388 DQDPSNKHYLRIPSRL*RSSQVHSG*PHSNSRVTWQAVSDHTAKTTMSSKLIGADADFFS 567
DQ+ ++++ + RL SSQ+ + ++N+ Q VS T +T +SK + A +
Sbjct: 71 DQEDNDRNRFPVMRRLGLSSQIETSRGNNNNEYATQVVSGFT-RTIHNSKYLKAAQELLD 129
Query: 568 EMV 576
E V
Sbjct: 130 ETV 132
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/67 (19%), Positives = 31/67 (46%)
Frame = +2
Query: 260 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 439
+++ A ++ ++A ++ GDGTT ++ + + V ++ + G +LA
Sbjct: 97 IKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVD 156
Query: 440 EAVKYIQ 460
V +Q
Sbjct: 157 TVVTNLQ 163
>At3g50090.1 68416.m05476 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 322
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 56 VDYSCTFVCSRDKILRRPSENTKCNGSSGY 145
+D S F + LRRPS NT C GY
Sbjct: 162 IDTSLVFKYPNSRKLRRPSLNTLCMSVLGY 191
>At2g46640.1 68415.m05818 hypothetical protein and genefinder;
expression supported by MPSS
Length = 310
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 299 QLQDEEVGDGTTSVVIIAAELLKNADE 379
++ D+E G G V+I ++KN D+
Sbjct: 65 EMDDDECGSGDLDYVVIDGSIIKNVDQ 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,349,155
Number of Sequences: 28952
Number of extensions: 236846
Number of successful extensions: 577
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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