Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30110.Seq
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces... 93 2e-20
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 27 0.98
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 27 1.3
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa... 27 1.3
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 3.0
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 6.9
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 25 6.9
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 6.9
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 24 9.1
>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 92.7 bits (220), Expect = 2e-20
Identities = 41/62 (66%), Positives = 52/62 (83%)
Frame = +2
Query: 68 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLW 247
KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI FA+K M T ++RVD LNK +W
Sbjct: 6 KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65
Query: 248 SK 253
+
Sbjct: 66 KR 67
Score = 25.8 bits (54), Expect = 3.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 253 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIK 372
G+RNVP +D++D A L+T V V VA+ K
Sbjct: 68 GIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANPK 105
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 27.5 bits (58), Expect = 0.98
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -1
Query: 216 RMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAI 37
R+ +P+ F R+ +G L PT R+ K Y TS M L +S LGL +
Sbjct: 45 RLIHIPLSFLQQPRVIAEIIGGIVLGPTVMGRIPKFLDYI-FPTSSMGPLNLVSNLGLVL 103
Query: 36 VI 31
+
Sbjct: 104 FL 105
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 241 EFV*ASVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTMKSF 119
E V S+Y N R +L ++ CSW + +S+T S+
Sbjct: 68 EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYSY 108
>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 227 RLNKFLWSKESEMFPSVSV*GFHEDVMMMKIPHISY 334
+L F WS PS + + +D + KIP+I Y
Sbjct: 132 KLTAFAWSVYDGRLPSSELSSYQKDRALRKIPNILY 167
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 3.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 416 GVYSWLASTFSVCKPLID 363
GV WLAST+S C +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 6.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 77 INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 175
INE VT +Y N+ + G+G ++A +K+I
Sbjct: 860 INEAVTNKYEANILPYIAGLG-PRKADYVLKKI 891
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 6.9
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -1
Query: 264 ISDSLDQRNLFKRVSTRMSGVPICFSANFRISLIALGARFLN 139
++ +DQ L R+ R SG +C+S F L + N
Sbjct: 22 LAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRN 63
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 24.6 bits (51), Expect = 6.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 105 VYSRVTTSFMADLPFLSPLGLAIVILSFVYQKKKK 1
V+ +TSF D+ FLS L LA+ L+ + K K
Sbjct: 1237 VFYEESTSFALDVDFLSSLQLAVESLTDLLISKFK 1271
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 361 QQARKSLV*ITYVRNLHHHYVFVKASH 281
++A+KSL + R + HYVFV H
Sbjct: 452 EEAKKSLWSKRFSRFYYGHYVFVNTCH 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,008
Number of Sequences: 5004
Number of extensions: 32185
Number of successful extensions: 59
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -