Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30110.Seq
(444 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-3|CAB63331.1| 122|Caenorhabditis elegans Hypothetical pr... 109 1e-24
Z82077-4|CAB63332.1| 70|Caenorhabditis elegans Hypothetical pr... 53 8e-08
U61953-6|AAO91706.1| 341|Caenorhabditis elegans Hypothetical pr... 27 6.1
U29380-18|ABB88224.1| 733|Caenorhabditis elegans Zygote defecti... 27 8.1
U29380-17|AAA68733.3| 736|Caenorhabditis elegans Zygote defecti... 27 8.1
U29380-16|AAS60254.1| 761|Caenorhabditis elegans Zygote defecti... 27 8.1
U29380-15|AAS60253.1| 777|Caenorhabditis elegans Zygote defecti... 27 8.1
AY487140-1|AAR32790.1| 733|Caenorhabditis elegans centrosome at... 27 8.1
>Z82077-3|CAB63331.1| 122|Caenorhabditis elegans Hypothetical
protein W09C5.6a protein.
Length = 122
Score = 109 bits (261), Expect = 1e-24
Identities = 48/75 (64%), Positives = 61/75 (81%)
Frame = +2
Query: 47 PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDT 226
PK E+K +S INEVVTREYT+++H R+ G+G KKRAPRAI EI+KFA+ QM T D+RVDT
Sbjct: 3 PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDT 62
Query: 227 RLNKFLWSKESEMFP 271
+LNKF+WSK + P
Sbjct: 63 KLNKFIWSKGIKNVP 77
Score = 53.2 bits (122), Expect = 8e-08
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +1
Query: 253 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 405
G++NVP+ N+DEDSA KL+TL TYVP + GL NVD+ +
Sbjct: 72 GIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122
>Z82077-4|CAB63332.1| 70|Caenorhabditis elegans Hypothetical
protein W09C5.6b protein.
Length = 70
Score = 53.2 bits (122), Expect = 8e-08
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +1
Query: 253 GVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 405
G++NVP+ N+DEDSA KL+TL TYVP + GL NVD+ +
Sbjct: 20 GIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 70
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 197 MGTPDIRVDTRLNKFLWSKESEMFP 271
M T D+RVDT+LNKF+WSK + P
Sbjct: 1 MKTNDVRVDTKLNKFIWSKGIKNVP 25
>U61953-6|AAO91706.1| 341|Caenorhabditis elegans Hypothetical
protein R08C7.9 protein.
Length = 341
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 134 VGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKESEMFPSVSV 283
+GF + R + + K M + D+ +D + F+W+ E PSV V
Sbjct: 51 IGFALISKRTKDQAERLNVK-MKSVDVWIDEAIKIFIWADSDERIPSVFV 99
>U29380-18|ABB88224.1| 733|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform d protein.
Length = 733
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -1
Query: 105 VYSRVTTSFMADLPFLSPLGLAIVILSFVYQKKKK 1
++ R+ + +DLP + LG+A+V L+ + + K+
Sbjct: 137 IHERIDGIYESDLPAMVNLGMAVVTLAHIGKNAKR 171
>U29380-17|AAA68733.3| 736|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform a protein.
Length = 736
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -1
Query: 105 VYSRVTTSFMADLPFLSPLGLAIVILSFVYQKKKK 1
++ R+ + +DLP + LG+A+V L+ + + K+
Sbjct: 137 IHERIDGIYESDLPAMVNLGMAVVTLAHIGKNAKR 171
>U29380-16|AAS60254.1| 761|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform c protein.
Length = 761
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -1
Query: 105 VYSRVTTSFMADLPFLSPLGLAIVILSFVYQKKKK 1
++ R+ + +DLP + LG+A+V L+ + + K+
Sbjct: 137 IHERIDGIYESDLPAMVNLGMAVVTLAHIGKNAKR 171
>U29380-15|AAS60253.1| 777|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform b protein.
Length = 777
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -1
Query: 105 VYSRVTTSFMADLPFLSPLGLAIVILSFVYQKKKK 1
++ R+ + +DLP + LG+A+V L+ + + K+
Sbjct: 137 IHERIDGIYESDLPAMVNLGMAVVTLAHIGKNAKR 171
>AY487140-1|AAR32790.1| 733|Caenorhabditis elegans centrosome
attachment protein A protein.
Length = 733
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -1
Query: 105 VYSRVTTSFMADLPFLSPLGLAIVILSFVYQKKKK 1
++ R+ + +DLP + LG+A+V L+ + + K+
Sbjct: 137 IHERIDGIYESDLPAMVNLGMAVVTLAHIGKNAKR 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,579,534
Number of Sequences: 27780
Number of extensions: 181263
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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