Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30109.Seq
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 136 1e-32
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 135 3e-32
07_03_1639 + 28305801-28305958,28306240-28306249 37 0.012
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 35 0.065
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 33 0.15
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 33 0.15
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 3.2
04_04_1687 - 35365766-35366356,35367137-35368135 29 4.3
04_04_1503 + 34031540-34031562,34031682-34032212,34032417-340325... 29 4.3
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 4.3
04_03_0266 + 13648287-13649099,13649186-13649524 28 5.6
04_01_0525 - 6886920-6887298,6888650-6888882 28 5.6
03_02_0050 + 5272471-5274861 28 5.6
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 7.5
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 28 7.5
02_05_0521 - 29726985-29727605 28 7.5
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 28 7.5
12_01_0476 + 3738526-3738567,3738695-3738739,3739240-3739601,373... 27 9.9
10_08_0781 + 20509033-20509714,20510048-20510191,20510604-205107... 27 9.9
08_01_0397 - 3509186-3510291,3510322-3512335 27 9.9
02_05_0067 + 25557975-25558553 27 9.9
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 27 9.9
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 136 bits (330), Expect = 1e-32
Identities = 60/84 (71%), Positives = 73/84 (86%)
Frame = +1
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 180
M SLKLQKRLAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 181 ARVRKNTEARRKGRHCGFGKRRGT 252
+R R+ EA++KGRH G+GKRRGT
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGT 84
Score = 99 bits (238), Expect = 2e-21
Identities = 48/84 (57%), Positives = 56/84 (66%)
Frame = +3
Query: 258 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 437
AR+P K LW AKKID+H+YH +YMK KGN+FKNKRVLME IH+ K
Sbjct: 87 ARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSK 146
Query: 438 AEKARTKMLSDQAEARRNKVKEAR 509
AEKAR K LSDQ EA+R K K +R
Sbjct: 147 AEKAREKTLSDQFEAKRAKSKASR 170
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 135 bits (327), Expect = 3e-32
Identities = 59/84 (70%), Positives = 73/84 (86%)
Frame = +1
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 180
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 181 ARVRKNTEARRKGRHCGFGKRRGT 252
+R R+ EA++KGRH G+GKRRGT
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGT 84
Score = 99 bits (238), Expect = 2e-21
Identities = 48/84 (57%), Positives = 56/84 (66%)
Frame = +3
Query: 258 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 437
AR+P K LW AKKID+H+YH +YMK KGN+FKNKRVLME IH+ K
Sbjct: 87 ARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSK 146
Query: 438 AEKARTKMLSDQAEARRNKVKEAR 509
AEKAR K LSDQ EA+R K K +R
Sbjct: 147 AEKAREKTLSDQFEAKRAKSKASR 170
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3
Query: 372 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNK 494
MK KGN+ NKR + +AEKAR + LSDQ EA+ K
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQFEAKLAK 41
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 34.7 bits (76), Expect = 0.065
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 429 RKKAEKARTKMLSDQAEARRNKVKEARSA 515
RKKAE+A K +++AEARR K +E R A
Sbjct: 208 RKKAEEAEAKRKAEEAEARRKKEEEERDA 236
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +1
Query: 16 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 186
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 748 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 805
Query: 187 VRKNTEARRKGRHCGFG 237
+ T RKGR GFG
Sbjct: 806 DEETTSISRKGRAQGFG 822
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +1
Query: 16 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 186
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 699 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 756
Query: 187 VRKNTEARRKGRHCGFG 237
+ T RKGR GFG
Sbjct: 757 DEETTSISRKGRAQGFG 773
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 85 INEIANTNSRQNIRKMIKDGLVIK-KPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAMR 261
+ E N NS + + GL+ + KP+ V S RVR + K GK R TA
Sbjct: 198 LGEANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAND 257
Query: 262 VC 267
+C
Sbjct: 258 MC 259
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 150 HQETCSSPLPRPCPQKHR 203
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>04_04_1503 +
34031540-34031562,34031682-34032212,34032417-34032571,
34032929-34033020,34033916-34034419
Length = 434
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 432 KKAEKAR--TKMLSDQAEARRNKVKEARSAARNVL-PPRRRNCCRPSLEKTKPRLPLRSK 602
+K K R T + D+ +ARR+K + + PPRR + + PR+PL +
Sbjct: 295 RKGNKQRMSTALDCDRTDARRSKTRGRNDRWMTIRGPPRRATRRQKNQLLNSPRVPLMGR 354
Query: 603 H 605
H
Sbjct: 355 H 355
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 142 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 255
G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 55 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 201
K+K+ L +E ++ T R+ RK+ K + KK + H ++RK++
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQA-IPKKKTSSHPMPKIRKSS 367
>04_01_0525 - 6886920-6887298,6888650-6888882
Length = 203
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 453 TKMLSDQAEARRNKVKEARSAARNVLPPRRRNCCRPSLEKTKP 581
T D+ + R+ + ++ R +++ +LPPRR + + E KP
Sbjct: 131 TAAADDEGDRRQQQHEDGRKSSQYLLPPRRPSSLQKIPEDQKP 173
>03_02_0050 + 5272471-5274861
Length = 796
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 509 SCLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 387
SCL + L +HL P LLS +P+D L H H +L H+
Sbjct: 91 SCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 70 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 174
LDP +NE N R NI IKD L ++ +H
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH 662
>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 333 AKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARS 512
AK + LY + K + ++ R + IHR AEK MLS + R + +K
Sbjct: 847 AKPKWKPLYTIFHKKNPRSRREDLRTHVANIHRMIAEKIWPGMLSRKPVLRLHFLKFIDE 906
Query: 513 AARNVLPP 536
R +LPP
Sbjct: 907 TCRQILPP 914
>02_05_0521 - 29726985-29727605
Length = 206
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 112 RQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAMRVCHRRNYGY 288
R +R M++ GL + +AV A R + EARR+ R +RR M N+ +
Sbjct: 54 RAAVRGMVRGGLAPRARLAVLRAAAFRDSREARRRIRRDRRRRRRRGMMVAALSPNHAF 112
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +1
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 180
+ SL L R+ C +V+ D + N +NIRK + ++++ P+A +
Sbjct: 103 IESLSLMIRMLL-YCECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQPK 161
Query: 181 ARVRKNTEARRK 216
NT RK
Sbjct: 162 IENSPNTVTVRK 173
>12_01_0476 +
3738526-3738567,3738695-3738739,3739240-3739601,
3739691-3740057,3740490-3740555,3741630-3741743
Length = 331
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 25 RLAASVMRCGKKKVWLDPNEINEIA--NTNSRQNIRKMIKDGLV 150
R A RC + LDPNEI ++ SR+ + +++ G++
Sbjct: 236 RFALHCRRCERDATPLDPNEIKHVSPYGITSREQVLEVVARGIL 279
>10_08_0781 +
20509033-20509714,20510048-20510191,20510604-20510719,
20511356-20511520,20511822-20512043,20512613-20512735
Length = 483
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 67 WLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGK 240
++D N+ + + +SR ++ ++ GL +K PV + VR E GR G G+
Sbjct: 29 YVDGNDTEDCYSGSSRASLAGALRQGLNLKSPVLGYKTPNVR---ELYTLGRELGQGQ 83
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 429 RKKAEKARTKMLSDQAEARRNKVKEARSAARNVLPPRRR 545
R+K ++ K L ++ E RR ++KE + R +RR
Sbjct: 158 RQKKKEEEQKQLDEEMETRRRRIKEWQEMKRREEETKRR 196
>02_05_0067 + 25557975-25558553
Length = 192
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 408 HACS*THYPSPSCRVSGIDACQSSW 334
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 55 KKKVWLDPN-EINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRK 216
K KVW P E+ + +R + +K + +KP A R RVRK TEA K
Sbjct: 681 KPKVWSRPRKEVEPVGKPKARGHPKKQAEPD---EKPKA---RGRVRKTTEANGK 729
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,463,394
Number of Sequences: 37544
Number of extensions: 388011
Number of successful extensions: 1228
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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