Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30109.Seq
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 130 6e-31
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 128 2e-30
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 128 4e-30
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 3e-05
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family... 31 0.88
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 30 1.5
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 30 1.5
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 3.6
At1g64690.1 68414.m07333 expressed protein 29 3.6
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 6.2
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00... 28 6.2
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 28 6.2
At2g40420.1 68415.m04985 amino acid transporter family protein s... 28 6.2
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 28 6.2
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 6.2
At5g67310.1 68418.m08488 cytochrome P450 family protein 27 8.2
At5g32600.1 68418.m03877 hypothetical protein 27 8.2
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 27 8.2
At3g20580.1 68416.m02605 phytochelatin synthetase-related contai... 27 8.2
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 8.2
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 8.2
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 130 bits (315), Expect = 6e-31
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = +1
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 180
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 181 ARVRKNTEARRKGRHCGFGKRRGT 252
+R R EA+RKGRH G+GKR+GT
Sbjct: 61 SRARALNEAKRKGRHSGYGKRKGT 84
Score = 98.7 bits (235), Expect = 3e-21
Identities = 48/84 (57%), Positives = 56/84 (66%)
Frame = +3
Query: 258 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 437
AR+P K LW +KKIDRH+YH +YMK KGNVFKNKRVLME IH+ K
Sbjct: 87 ARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMK 146
Query: 438 AEKARTKMLSDQAEARRNKVKEAR 509
AEKAR K L+DQ EA+R K K +R
Sbjct: 147 AEKAREKTLADQFEAKRIKNKASR 170
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 128 bits (310), Expect = 2e-30
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = +1
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 180
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 181 ARVRKNTEARRKGRHCGFGKRRGT 252
+R RK A+ KGRH G+GKR+GT
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKGT 84
Score = 98.3 bits (234), Expect = 4e-21
Identities = 47/84 (55%), Positives = 55/84 (65%)
Frame = +3
Query: 258 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 437
AR+P K LW KKID+H+YH +YM+ KGNVFKNKRVLME IH+ K
Sbjct: 87 ARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSK 146
Query: 438 AEKARTKMLSDQAEARRNKVKEAR 509
AEKAR K LSDQ EA+R K K +R
Sbjct: 147 AEKAREKTLSDQFEAKRAKNKASR 170
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 128 bits (308), Expect = 4e-30
Identities = 55/84 (65%), Positives = 72/84 (85%)
Frame = +1
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 180
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 181 ARVRKNTEARRKGRHCGFGKRRGT 252
+R R+ A+RKGRH G+GKR+GT
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKGT 84
Score = 100 bits (240), Expect = 7e-22
Identities = 49/84 (58%), Positives = 55/84 (65%)
Frame = +3
Query: 258 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 437
AR+P K LW KKIDRH+YH +YMK KGNVFKNKRVLME IH+ K
Sbjct: 87 ARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
Query: 438 AEKARTKMLSDQAEARRNKVKEAR 509
AEKAR K LSDQ EA+R K K +R
Sbjct: 147 AEKAREKTLSDQFEAKRAKNKASR 170
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 336 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 446
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
protein
Length = 1332
Score = 30.7 bits (66), Expect = 0.88
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Frame = +3
Query: 360 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNK--VKEARSAARNVLP 533
H L + K K + H+ +K++ KM+ D EA +NK VKEAR A ++ +
Sbjct: 495 HGLVSSVPDHSRKRKDIDPSIKHKMVPQKSQ-KMMEDSREAGKNKLGVKEARDAGKSKIS 553
Query: 534 PRRR---NCCRPSLEKTKPRLPLRSKH 605
R P+ K +P+ SKH
Sbjct: 554 LGERLFSYTQEPNPVKPGRVIPVDSKH 580
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Frame = +3
Query: 360 HSLYMKAKGNVFKNKRVLMEYI-HRKKAEK-ARTKMLSDQAEARRNKVKE---ARSAARN 524
H + G V + + +++ + AEK ++ +++ ++RR++ + +RS R+
Sbjct: 71 HKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRS 130
Query: 525 VLPPRRRNCCRPSLEKTKPRLPLRSKHY 608
PPRRR+ R + + R R K Y
Sbjct: 131 RSPPRRRSPRRSRSPRRRSRDDYREKDY 158
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Frame = +3
Query: 360 HSLYMKAKGNVFKNKRVLMEYI-HRKKAEK-ARTKMLSDQAEARRNKVKE---ARSAARN 524
H + G V + + +++ + AEK ++ +++ ++RR++ + +RS R+
Sbjct: 71 HKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRS 130
Query: 525 VLPPRRRNCCRPSLEKTKPRLPLRSKHY 608
PPRRR+ R + + R R K Y
Sbjct: 131 RSPPRRRSPRRSRSPRRRSRDDYREKDY 158
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -3
Query: 472 WSLSIFVLAFSAFFLWMYSMSTRL 401
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At1g64690.1 68414.m07333 expressed protein
Length = 273
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +3
Query: 339 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSD---QAEARRNKVKEAR 509
++ R L M V + +RV M+ + + + + L + Q E RN++ + +
Sbjct: 142 RMKRDLEEERQMHRLAEVLREERVQMKLMDARLFLEEKLSELEEANRQGERERNRMMKPK 201
Query: 510 SAARNVLPPRRRNCCRPSLEK 572
R P RR C P +++
Sbjct: 202 ILERACSSPARRRCENPQIKR 222
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 161 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 66
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 571
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 553 QQFLLLGGNTFLAALRASFTLLRRASAWSL 464
+Q L GNTF +L+AS TL+ W +
Sbjct: 347 RQSFLSSGNTFCLSLKASCTLMSSYEGWPI 376
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 258 HCSTSSLTKATVTTLSTCLCVFADTGAGVDCYRFLDDETILDHL 127
H + + A V L T L V D+G GV F DDE I++ +
Sbjct: 641 HTNLLQVRAAAVFALGTLLDVGFDSGKGVCDEEFDDDENIVEDI 684
>At2g40420.1 68415.m04985 amino acid transporter family protein
similar to neuronal glutamine transporter [Rattus
norvegicus] GI:6978016; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 440
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = -1
Query: 354 DACQSSWQFCTSGAIFLEPFVFVPIVPSVAYAHCSTSSLTKATVTTLSTCLCVFADTGAG 175
D S + T+ + + F F V VA+ L + T +S LC + G
Sbjct: 218 DGGLSFFSLFTASPVIVTAFTFHFNVHPVAFE--LKDPLNVLSATRISVILCATIYSATG 275
Query: 174 VDCYRFLDDETILDHL 127
+ CY D T+ D L
Sbjct: 276 LFCYLLFGDSTMTDVL 291
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 491 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 375
IA L KHL+P L+SL+P V H EH L + RL
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 139 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRR 246
D + KK + + + ++RKN + RR+G G G RR
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRR 112
>At5g67310.1 68418.m08488 cytochrome P450 family protein
Length = 507
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 390 HYPSPSCRVSGIDACQSSWQFCTSGAIFLEPFVF 289
H S C V+G D + +W F + AI +P V+
Sbjct: 382 HASSTDCEVAGFDIPRRTWLFINAWAIQRDPNVW 415
>At5g32600.1 68418.m03877 hypothetical protein
Length = 388
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 453 TKMLSDQAEARRNKVKEARSAARNVLPPR 539
TK+ + A++ + KE R A RNVLP R
Sbjct: 160 TKLTLREVYAKKKEDKERRLAERNVLPKR 188
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 381 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARSAARNVLPPRRR 545
KG+ + ++ E + +KK EKAR + ++ AE R + EA +AA +R+
Sbjct: 562 KGDPERLRKEREELVLQKKKEKARLQAEAEAAEDARRQA-EAEAAAEAAAEAKRK 615
>At3g20580.1 68416.m02605 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region; supporting cDNA gi|26452232|dbj|AK118605.1|
Length = 672
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 217 GRHCGFGKRRGTAMRVCHRRNYGYKDK 297
G C KR+G +M VC +RN K+K
Sbjct: 190 GWECPAAKRKGGSMHVCCKRNPKIKNK 216
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 333 AKKIDRHLYHSLYMKAKGNVFKNKRVL 413
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 252
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,458,843
Number of Sequences: 28952
Number of extensions: 289214
Number of successful extensions: 925
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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