Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30108.Seq
(591 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68227-10|CAA92515.1| 95|Caenorhabditis elegans Hypothetical p... 64 9e-11
U97593-4|AAB52877.2| 93|Caenorhabditis elegans Hypothetical pr... 52 2e-07
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 30 1.1
Z83128-7|CAB05634.2| 243|Caenorhabditis elegans Hypothetical pr... 28 4.3
U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical pr... 28 4.3
AF039717-4|AAO21385.1| 303|Caenorhabditis elegans Abnormal daue... 28 4.3
AF039717-3|AAK82917.1| 530|Caenorhabditis elegans Abnormal daue... 28 4.3
AF039717-2|AAK82918.1| 508|Caenorhabditis elegans Abnormal daue... 28 4.3
AF039717-1|AAK82919.1| 510|Caenorhabditis elegans Abnormal daue... 28 4.3
AF032112-1|AAC47803.1| 510|Caenorhabditis elegans DAF-16 protein. 28 4.3
AF020344-1|AAB84392.1| 530|Caenorhabditis elegans fork head-rel... 28 4.3
AF020343-1|AAB84391.1| 508|Caenorhabditis elegans fork head-rel... 28 4.3
AF020342-1|AAB84390.1| 510|Caenorhabditis elegans fork head-rel... 28 4.3
AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched relat... 28 4.3
U41995-2|AAA83460.1| 317|Caenorhabditis elegans Serpentine rece... 28 5.7
U28738-3|AAA68310.2| 468|Caenorhabditis elegans Hypothetical pr... 27 10.0
AC006795-1|AAF59492.2| 435|Caenorhabditis elegans Hypothetical ... 27 10.0
>Z68227-10|CAA92515.1| 95|Caenorhabditis elegans Hypothetical
protein F49C12.12 protein.
Length = 95
Score = 63.7 bits (148), Expect = 9e-11
Identities = 34/76 (44%), Positives = 47/76 (61%)
Frame = +1
Query: 1 KLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYTLN 180
K+S +V+SVWG+I L L+GVF+YI+AV L DL F+ + VI+ + Y
Sbjct: 11 KMSAFCMVMSVWGVIFLGLLGVFFYIQAVTLFPDLHFEGHG---KVPSSVIDAK--YNEK 65
Query: 181 AQNCWIAALLYLITLV 228
A CWIAA LY +TL+
Sbjct: 66 ATQCWIAAGLYAVTLI 81
>U97593-4|AAB52877.2| 93|Caenorhabditis elegans Hypothetical
protein C46G7.1 protein.
Length = 93
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 19 LVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSI-EDFVIEVEKGYTLNAQNCW 195
L L++WG + + ++G +Y ++V L EDLP + K S+ D K Y NA NCW
Sbjct: 11 LFLALWGTVFMAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLYQQNAYNCW 70
Query: 196 IAALLYL 216
IA +Y+
Sbjct: 71 IACGVYI 77
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = +1
Query: 64 VFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVVSGHQ 243
V Y+I ++ L D KN PH ++ + N +N + L L V + +
Sbjct: 336 VLYFISSIRYLMDKNISLKNIPHYYFQNYPQIVSNVSTNNKNRFKGGLEKL--HVYANDE 393
Query: 244 FWLKIVPQLVCNIE 285
+ K+ P+LV NIE
Sbjct: 394 LFSKMYPELVVNIE 407
>Z83128-7|CAB05634.2| 243|Caenorhabditis elegans Hypothetical
protein W01D2.3 protein.
Length = 243
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 127 PHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVV 231
PHS E E+E+ + ++C+ AL L+TLV+
Sbjct: 81 PHSYELLFREIERVFGRRREHCFYGALGVLLTLVL 115
>U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical
protein C34D10.2 protein.
Length = 675
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 222 CNQVQQCRNPTILCIQGISF-FHFNDEVFDRMRRIFLIKW 106
C + +QCR P LC QG + F+ N + DR R L K+
Sbjct: 199 CYKTEQCRKPARLCRQGYACPFYHNSK--DRRRPPALYKY 236
>AF039717-4|AAO21385.1| 303|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform e protein.
Length = 303
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 432 YSNY*NIVIVSL-YLSTAGCKPLP*SAQCTILYLSHPIFSS 551
Y NY N I + +LST+ PLP C I+ H + SS
Sbjct: 220 YGNYQNGGITPINWLSTSNSSPLPGIQSCGIVAAQHTVASS 260
>AF039717-3|AAK82917.1| 530|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform a protein.
Length = 530
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 432 YSNY*NIVIVSL-YLSTAGCKPLP*SAQCTILYLSHPIFSS 551
Y NY N I + +LST+ PLP C I+ H + SS
Sbjct: 447 YGNYQNGGITPINWLSTSNSSPLPGIQSCGIVAAQHTVASS 487
>AF039717-2|AAK82918.1| 508|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform b protein.
Length = 508
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 432 YSNY*NIVIVSL-YLSTAGCKPLP*SAQCTILYLSHPIFSS 551
Y NY N I + +LST+ PLP C I+ H + SS
Sbjct: 425 YGNYQNGGITPINWLSTSNSSPLPGIQSCGIVAAQHTVASS 465
>AF039717-1|AAK82919.1| 510|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform c protein.
Length = 510
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 432 YSNY*NIVIVSL-YLSTAGCKPLP*SAQCTILYLSHPIFSS 551
Y NY N I + +LST+ PLP C I+ H + SS
Sbjct: 427 YGNYQNGGITPINWLSTSNSSPLPGIQSCGIVAAQHTVASS 467
>AF032112-1|AAC47803.1| 510|Caenorhabditis elegans DAF-16 protein.
Length = 510
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 432 YSNY*NIVIVSL-YLSTAGCKPLP*SAQCTILYLSHPIFSS 551
Y NY N I + +LST+ PLP C I+ H + SS
Sbjct: 427 YGNYQNGGITPINWLSTSNSSPLPGIQSCGIVAAQHTVASS 467
>AF020344-1|AAB84392.1| 530|Caenorhabditis elegans fork
head-related transcriptionfactor DAF-16b protein.
Length = 530
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 432 YSNY*NIVIVSL-YLSTAGCKPLP*SAQCTILYLSHPIFSS 551
Y NY N I + +LST+ PLP C I+ H + SS
Sbjct: 447 YGNYQNGGITPINWLSTSNSSPLPGIQSCGIVAAQHTVASS 487
>AF020343-1|AAB84391.1| 508|Caenorhabditis elegans fork
head-related transcriptionfactor DAF-16a2 protein.
Length = 508
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 432 YSNY*NIVIVSL-YLSTAGCKPLP*SAQCTILYLSHPIFSS 551
Y NY N I + +LST+ PLP C I+ H + SS
Sbjct: 425 YGNYQNGGITPINWLSTSNSSPLPGIQSCGIVAAQHTVASS 465
>AF020342-1|AAB84390.1| 510|Caenorhabditis elegans fork
head-related transcriptionfactor DAF-16a1 protein.
Length = 510
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 432 YSNY*NIVIVSL-YLSTAGCKPLP*SAQCTILYLSHPIFSS 551
Y NY N I + +LST+ PLP C I+ H + SS
Sbjct: 427 YGNYQNGGITPINWLSTSNSSPLPGIQSCGIVAAQHTVASS 467
>AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched related
family protein 4 protein.
Length = 960
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 193 WIAALLYLITLVVSGHQFWLKIVP--QLVCNIEGVVIFAVN 309
W+ + + + V+ HQFW IVP V +I G+ +N
Sbjct: 13 WMQKVFFKYGIFVAKHQFWFLIVPLALTVLSIPGLFYLQIN 53
>U41995-2|AAA83460.1| 317|Caenorhabditis elegans Serpentine
receptor, class x protein46 protein.
Length = 317
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 264 RNDFQPKLMSRYNQCNQVQQCRNPTILCIQGISFFHFNDEVFDRMRRIFL 115
+ND + K M+ C VQ C + I+ I +F + V D R F+
Sbjct: 200 KNDAKSKQMNSKEICFLVQTCLQGVLFSIELICYFIISPRVEDTWVRFFM 249
>U28738-3|AAA68310.2| 468|Caenorhabditis elegans Hypothetical
protein T28D9.4 protein.
Length = 468
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 43 IQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVI 153
+ T++ VF ++ + L + L + KNPPHS+ V+
Sbjct: 388 VMFTIIAVFRFVFIIILFKVLIY--KNPPHSLTTTVL 422
>AC006795-1|AAF59492.2| 435|Caenorhabditis elegans Hypothetical
protein Y50D4B.7 protein.
Length = 435
Score = 27.1 bits (57), Expect = 10.0
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 22 VLSVWGIIQLTLMGVFYYIRAVALLE---DLPFDEKNPPHSIEDFVIEVEKGYTLNAQNC 192
V +V + TL V++ I LLE + FD K+ SIE VI++E + N
Sbjct: 107 VFNVQRVENRTLGAVYFKILIKGLLELWLEWKFDLKSEGKSIEKIVIKMEGIQEIADGNG 166
Query: 193 WIAALLYLITL 225
I A YL+ +
Sbjct: 167 IIKACPYLLNI 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,023,252
Number of Sequences: 27780
Number of extensions: 287780
Number of successful extensions: 778
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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