Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30107.Seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    29   0.031
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.3  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 0.031
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
 Frame = +2

Query: 209 EGAQKEDQRSRKREQ--SKPEPKPAKGVTVPTRKGIKETQNVKSXTSKVENNRRVRDLHA 382
           + A+  ++R R+ E   +   P P    TV  R   K++Q  ++  +++E NRR    H 
Sbjct: 8   QAAEYIERREREAEHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTHNELEKNRRA---HL 64

Query: 383 RSIVMLSVRLRVVVKIGRRTVPQKXGRSSAGHRDASLAIVGLLQRAPQF*RQQPGRCRAF 562
           R+ +    +L+V+V +G  T            R  +L   GLL +A +F +    R R  
Sbjct: 65  RNCL---EKLKVLVPLGPET-----------SRHTTL---GLLTKAKRFIKSLEERERKH 107

Query: 563 AVHQD 577
           AVH++
Sbjct: 108 AVHKE 112


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 593 EGSRGGLGGPR 561
           +GS GG GGPR
Sbjct: 144 DGSPGGNGGPR 154


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 593 EGSRGGLGGPR 561
           +GS GG GGPR
Sbjct: 144 DGSPGGNGGPR 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,253
Number of Sequences: 438
Number of extensions: 3232
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)