Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30104.Seq
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   4.0  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   4.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.0  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 45  YYRYNLFFDCGMLGNLINMYAAKFLIH 125
           Y+  + FF     GN+I  Y  +F IH
Sbjct: 240 YFFISTFFYFFTTGNIIATYDKQFYIH 266



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 43  IIIDTICFLIVVCLEI 90
           +I  T+CF++++ LEI
Sbjct: 164 VISATVCFMMLLMLEI 179


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 45  YYRYNLFFDCGMLGNLINMYAAKFLIH 125
           Y+  + FF     GN+I  Y  +F IH
Sbjct: 236 YFFISTFFYFFTTGNIIATYDKQFYIH 262



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 43  IIIDTICFLIVVCLEI 90
           +I  T+CF++++ LEI
Sbjct: 160 VISATVCFMMLLMLEI 175


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 84  QAYHNQKTNCIYNNQVYLTRSTF 16
           ++  N    CI+N Q Y   S F
Sbjct: 740 ESNRNVPQKCIFNGQAYFPGSRF 762


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,556
Number of Sequences: 336
Number of extensions: 3585
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)