Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30100.Seq
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 65 6e-12
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 51 1e-07
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 49 6e-07
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 41 1e-04
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 40 4e-04
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 36 0.003
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 34 0.018
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.50
SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.50
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 28 1.2
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 1.5
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 6.2
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz... 25 8.1
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 8.1
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 65.3 bits (152), Expect = 6e-12
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Frame = +1
Query: 256 LAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI-DYSGGRQADDIISWLKKKTGPPAVEV 432
L +VD T+E DL Y +RGYPTL F+NG I YSG R+ D ++ +++K+ P V+
Sbjct: 75 LVEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQYSGPRKHDALVKYMRKQL-LPTVKP 133
Query: 433 TSAEQAKELID-ANTVIVFGFFSDQ 504
S + + ++ A+ + V FF DQ
Sbjct: 134 ISKDTLENFVEKADDLAVVAFFKDQ 158
Score = 63.7 bits (148), Expect = 2e-11
Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = +2
Query: 86 TEENVLVLSKANFETVITT-TEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIN*R 262
++E+++VL NF+ ++ T+ +LVEFYAPWCGHCK+LAP Y K A + +++ + +
Sbjct: 353 SQEDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVV-A 411
Query: 263 KLTQLKNRIS 292
K+ +N IS
Sbjct: 412 KIDATENDIS 421
Score = 58.8 bits (136), Expect = 5e-10
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +2
Query: 107 LSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEE 241
++K +IT + ++V+FYAPWCGHCK+LAPEY AA +L ++
Sbjct: 27 VNKEGLNELITADKVLMVKFYAPWCGHCKALAPEYESAADELEKD 71
Score = 36.7 bits (81), Expect = 0.002
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Frame = +1
Query: 256 LAKVDATQEQDLAESYGVRGYPTLKFFRNG---SPIDYSGGRQADDIISWLKK 405
+AK+DAT E D++ S + G+PT+ FF+ +P+ Y G R +D+ +++ K
Sbjct: 410 VAKIDAT-ENDISVS--ISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDK 459
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 50.8 bits (116), Expect = 1e-07
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +2
Query: 32 LIFTAIALLGLALGDEVPTEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEY 211
L +L+ G N + L+ NF + LV FYAPWCG+CK L P Y
Sbjct: 11 LFLACFSLVSGVFGYSPMFGSNTIELNSKNFRKFVKAKGPSLVVFYAPWCGYCKKLVPTY 70
Query: 212 AKAATKL 232
K A+ L
Sbjct: 71 QKLASNL 77
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = +1
Query: 268 DATQEQDLAESYGVRGYPTLKFF---RNGSPI---DYSGGRQADDIISWLKKKTGPPAVE 429
DA Q + + Y V+G+PT+K GS + DY+G R + ++ P V+
Sbjct: 89 DADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDSI-PSKVK 147
Query: 430 VTSAE 444
+ ++E
Sbjct: 148 ILTSE 152
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 48.8 bits (111), Expect = 6e-07
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +2
Query: 95 NVLVLSKANFETVITTTEY-ILVEFYAPWCGHCKSLAPEY 211
NV+ L NF+ V+ + +LVEFYA WCG+CK LAP Y
Sbjct: 141 NVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTY 180
Score = 47.6 bits (108), Expect = 1e-06
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 256 LAKVDATQEQDLAESYGVRGYPTLKFF-RNGS-PIDYSGGRQADDIISWLKKKTGPPAVE 429
+ K+DA D+A+ Y + G+PTL +F +GS P+ YS R D + ++ +KTG +
Sbjct: 76 IGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNARDVDSLTQFVSEKTGIKKRK 135
Query: 430 VTSAEQAKELIDAN 471
+ EL N
Sbjct: 136 IVLPSNVVELDSLN 149
Score = 46.4 bits (105), Expect = 3e-06
Identities = 24/65 (36%), Positives = 34/65 (52%)
Frame = +2
Query: 17 IEMRVLIFTAIALLGLALGDEVPTEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKS 196
+ + +L F AL L V +++ L T+ + + L+EFYA WCGHCKS
Sbjct: 1 MRLPLLSFVIFALFALVFASGVVELQSLNELEN----TIRASKKGALIEFYATWCGHCKS 56
Query: 197 LAPEY 211
LAP Y
Sbjct: 57 LAPVY 61
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 253 QLAKVDATQEQDLAESYGVRGYPTLKFF---RNGSPIDYSGGRQADDIISWLKKKTG 414
++ K++A D+ + V +PT+KFF P Y G R + +I ++ KK+G
Sbjct: 194 EIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSG 250
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 41.1 bits (92), Expect = 1e-04
Identities = 12/36 (33%), Positives = 26/36 (72%)
Frame = +2
Query: 104 VLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEY 211
V + F++++ + ++V+F+A WCG CK++AP++
Sbjct: 5 VSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKF 40
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 262 KVDATQEQDLAESYGVRGYPTLKFFRNGSPID 357
KVD Q ++A GV P+ ++NG I+
Sbjct: 54 KVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIE 85
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 39.5 bits (88), Expect = 4e-04
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +2
Query: 104 VLSKANFETVITTTEYILVEFYAPWCGHCKSLAPEYAKAATKLA 235
+ S ++ + I + Y+ V+ YA WCG CK+++P +++ A+K A
Sbjct: 6 IRSYQHWISTIPKSGYLAVDCYADWCGPCKAISPLFSQLASKYA 49
Score = 36.3 bits (80), Expect = 0.003
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 250 YQLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGR--QA--DDIISWLKKKTGP 417
+ AKV+ +++ +A GV+ PT FF NG ID G QA + + K TG
Sbjct: 53 FVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVALISSKATGT 112
Query: 418 PAVEVTSAEQAK 453
A+ +S+ K
Sbjct: 113 GALASSSSAPVK 124
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 36.3 bits (80), Expect = 0.003
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 104 VLSKANFETVITTTEYILVEFYAPWCGHCKSLAP 205
V S ++ T I+ + +V+FYA WCG CK L P
Sbjct: 22 VESFGDYNTRISADKVTVVDFYADWCGPCKYLKP 55
Score = 31.1 bits (67), Expect = 0.12
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 265 VDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKK 405
V+A + D+A+ GV PT+ FR G +D G + S L K
Sbjct: 72 VNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAK 118
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.9 bits (74), Expect = 0.018
Identities = 11/64 (17%), Positives = 35/64 (54%)
Frame = +1
Query: 253 QLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGPPAVEV 432
++A+V+ +E+++ + ++ +PT + F+ I Y+G + ++S+ + A+++
Sbjct: 231 KMAQVNCDEEKEMCNHFHIKKFPTFRVFQGFDSIQYNGPLKYQQLLSYSNQVASYQAIKI 290
Query: 433 TSAE 444
+
Sbjct: 291 EEGD 294
Score = 28.7 bits (61), Expect = 0.66
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Frame = +1
Query: 241 RISYQLAKVDAT---QEQDLAESYGVRGYPTLKFFRNGSPIDYSG--GRQADD---IISW 396
R+ QLA V + LA YG + P++ RNG PI Y R+ D I W
Sbjct: 324 RLKLQLAGVAPLYICNSKALANKYGAQSQPSIIAVRNGMPIVYQAITPREFRDYKRITEW 383
Query: 397 LKKKTGPPAVEVT 435
+ + P E+T
Sbjct: 384 INIVSSPFITELT 396
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 29.1 bits (62), Expect = 0.50
Identities = 15/84 (17%), Positives = 38/84 (45%)
Frame = +1
Query: 256 LAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGPPAVEVT 435
+A ++ + + Y ++ +PT FF+ + ++Y G D++S+ ++ EV
Sbjct: 333 VAHINCAVSKRACKQYSIQYFPTFLFFKEEAFVEYVGLPNEGDLVSFAEEAANFEIREVE 392
Query: 436 SAEQAKELIDANTVIVFGFFSDQS 507
+ + + ++ F+ D S
Sbjct: 393 LLDTVNAEKNGDVFFLY-FYDDDS 415
Score = 28.3 bits (60), Expect = 0.87
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 158 VEFYAPWCGHCKSLAPEYAKAATKLAEE 241
+++Y P CG CK L P + K E+
Sbjct: 47 IKYYLPSCGACKRLGPMWDNMVEKAKEQ 74
>SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 113
Score = 29.1 bits (62), Expect = 0.50
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 558 LGHRQLEQLKGKFWLWLALVRKETKYNNSIGID 460
+G E++ GKF W L RK TK GID
Sbjct: 43 IGRDTAEKVNGKFESWDGLFRKSTKTMKKEGID 75
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 146 EYILVEFYAPWCGHCKSL 199
+ IL+ FYAPW CK +
Sbjct: 21 QIILLNFYAPWAAPCKQM 38
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 93 KMCSF*VKLTLKL*LQPRSTF*LNSMLHGAATANLWHRNTP 215
K +F L LQP T N +L+ + NLW R+ P
Sbjct: 620 KSANFDFSFLKSLDLQPTITLGKNDLLNAILSQNLWFRSLP 660
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Frame = -1
Query: 265 LSLVDRRFFFSQLCCCLGVF-----RCQRFAVAAPWSI 167
L ++D F S L C + RC R V PW++
Sbjct: 68 LFVLDTNFLLSHLSLCQNLIEFLTARCPRLVVVLPWTV 105
>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
Alg11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 352 IDYSGGRQADDIISWLKKKTGPPAVEVTSAEQA 450
++ SGG + D +I W+ K TG A ++ +A
Sbjct: 389 VNNSGGPKFDIVIPWIGKPTGFHASTISEYAEA 421
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 453 FSLFSRGDLNSRGASLLLQPTDDVISLTTT*IVDRT 346
F S+G+L+ SLL +D+V +TTT +VD T
Sbjct: 304 FEFDSKGNLD---VSLLKSLSDEVNMITTTSLVDNT 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,569
Number of Sequences: 5004
Number of extensions: 44016
Number of successful extensions: 141
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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