Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30099.Seq
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 180 1e-46
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 180 2e-46
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 180 2e-46
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 106 4e-24
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 100 2e-22
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 78 1e-15
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.003
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.008
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.008
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.018
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.032
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.29
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 30 0.39
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.51
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 29 0.68
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.68
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 2.7
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.6
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 26 6.3
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 6.3
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 25 8.4
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 8.4
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 25 8.4
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 180 bits (439), Expect = 1e-46
Identities = 86/125 (68%), Positives = 101/125 (80%)
Frame = +2
Query: 257 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 436
KFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHAL
Sbjct: 79 KFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHAL 138
Query: 437 LAFTLGVKQLIVGVNKMDSTEPPYVSPDLRKSRRKYPHTFKKIGYNPAAVAFVPISGWHG 616
LA+TLGVKQLIV VNKMD+T + + ++ + KK+G+NP V FVP+SG+ G
Sbjct: 139 LAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQG 196
Query: 617 DNMLE 631
DNM+E
Sbjct: 197 DNMIE 201
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +1
Query: 25 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 204
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 205 DKLKAERE 228
DKLKAERE
Sbjct: 61 DKLKAERE 68
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 180 bits (438), Expect = 2e-46
Identities = 85/125 (68%), Positives = 101/125 (80%)
Frame = +2
Query: 257 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 436
KFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHAL
Sbjct: 79 KFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHAL 138
Query: 437 LAFTLGVKQLIVGVNKMDSTEPPYVSPDLRKSRRKYPHTFKKIGYNPAAVAFVPISGWHG 616
LA+TLGVKQLIV VNKMD+T + + ++ + KK+G+NP V FVP+SG+ G
Sbjct: 139 LAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQG 196
Query: 617 DNMLE 631
DNM+E
Sbjct: 197 DNMIE 201
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +1
Query: 25 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 204
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 205 DKLKAERE 228
DKLKAERE
Sbjct: 61 DKLKAERE 68
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 180 bits (438), Expect = 2e-46
Identities = 85/125 (68%), Positives = 101/125 (80%)
Frame = +2
Query: 257 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 436
KFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHAL
Sbjct: 79 KFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHAL 138
Query: 437 LAFTLGVKQLIVGVNKMDSTEPPYVSPDLRKSRRKYPHTFKKIGYNPAAVAFVPISGWHG 616
LA+TLGVKQLIV VNKMD+T + + ++ + KK+G+NP V FVP+SG+ G
Sbjct: 139 LAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQG 196
Query: 617 DNMLE 631
DNM+E
Sbjct: 197 DNMIE 201
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +1
Query: 25 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 204
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 205 DKLKAERE 228
DKLKAERE
Sbjct: 61 DKLKAERE 68
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 106 bits (254), Expect = 4e-24
Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Frame = +2
Query: 260 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 439
FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+L
Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 370
Query: 440 AFTLGVKQLIVGVNKMDSTEPPYVSPDLRKSRRKYPHTFKKI-GYNPAA-VAFVPISGWH 613
A T G+ L+V +NKMD + ++ K +++ GYN V ++P+S +
Sbjct: 371 ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYT 430
Query: 614 GDNM 625
G N+
Sbjct: 431 GQNV 434
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = +1
Query: 37 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 216
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 217 AERE 228
ERE
Sbjct: 296 EERE 299
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 100 bits (240), Expect = 2e-22
Identities = 56/129 (43%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Frame = +2
Query: 251 SRKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 430
S FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREH
Sbjct: 247 STTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH 306
Query: 431 ALLAFTLGVKQLIVGVNKMDSTEPPYVSPDLRKSRRKYPHTF--KKIGYNPAAVAFVPIS 604
A L LG+ +++V VNK+D S D + + F K +G+ + V FVPIS
Sbjct: 307 AYLLRALGISEIVVSVNKLDLMS---WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPIS 363
Query: 605 GWHGDNMLE 631
G N+++
Sbjct: 364 AISGTNLIQ 372
Score = 72.5 bits (170), Expect = 6e-14
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +1
Query: 37 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 216
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 217 AER 225
ER
Sbjct: 235 EER 237
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 77.8 bits (183), Expect = 1e-15
Identities = 37/85 (43%), Positives = 55/85 (64%)
Frame = +2
Query: 257 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 436
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 437 LAFTLGVKQLIVGVNKMDSTEPPYV 511
LA +GVKQ++V +NK+D EP +
Sbjct: 163 LARQVGVKQIVVYINKVDMVEPDMI 187
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 31 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 117
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2
Query: 278 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 457
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 458 KQLIVGVNKMD 490
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 25 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 120
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 275 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 370
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 25 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 120
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 275 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 370
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.018
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +2
Query: 260 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 430
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 29.1 bits (62), Expect = 0.68
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 49 NIVVIGHVDSGKSTTTGHLIYKCGGI 126
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 260 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 385
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 275 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 385
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.9 bits (64), Expect = 0.39
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 260 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 385
+ Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 119 YHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.51
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 287 IIDAPGHRDFIKNMITGTSQADCAVLIV 370
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 29.1 bits (62), Expect = 0.68
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 274 LASFELPRAISIVIPXHAQPLVCPIPKHI*RILYPFPGPPSRTSR 140
L F L + +++VIP PLV I H R+ P GP + +R
Sbjct: 62 LVKFALDKDVNLVIPGPELPLVEGIEGHFRRVGIPCFGPSALAAR 106
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 0.68
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 281 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 460
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 461 QLIVGVNKMD 490
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
Score = 28.7 bits (61), Expect = 0.90
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 49 NIVVIGHVDSGKSTTTGHLIYKCG 120
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.1 bits (57), Expect = 2.7
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Frame = +2
Query: 464 LIVGVNKMDSTEPPYVSPDLRKSRRKYPHTFKKIGYNPAAVAFVPI-------SGWHGDN 622
+ VGVN +D+TE + + D+ R + T KI P+ + F+ + +GW N
Sbjct: 1195 MTVGVN-IDATEKGHAAMDVYVLRME---TITKIPNLPSRIKFMLMDVMDSRKNGWAVKN 1250
Query: 623 MLELQPKCLGSRDGQVERKVRPS*RKMPH*SSRCH 727
+E PK + + ERK + + P S R H
Sbjct: 1251 EVEKGPKTIAEIHEEAERKKALAESQRPS-SGRMH 1284
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 290 IDAPGHRDFIKNMITGTSQADCAVLIV 370
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 502 TIREPRFEEIKKEVSSYIQEDWLQPSCCRFRAHF 603
TIRE +++ Y ED++ P R R HF
Sbjct: 374 TIREKYAKQVAVVRQQYPSEDFILPDADRIRFHF 407
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 463 AHRRSKQNGFH*TTIREPR 519
+H K+NG+H ++IR+PR
Sbjct: 275 SHPYFKENGYHSSSIRDPR 293
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.4 bits (53), Expect = 8.4
Identities = 24/60 (40%), Positives = 31/60 (51%)
Frame = +2
Query: 368 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYVSPDLRKSRRKYP 547
VA GT E GI NG E+A+ A +I V++ +PP VS KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQ----QPP-VSHTSHKSRRQYP 95
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 211 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 83
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 700 FPSAWPYLTLHLPIP*TKAFWLKLQHV 620
FP W L LPIP TK ++++HV
Sbjct: 395 FPPLW-ILASFLPIPRTKIHQMRVKHV 420
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,575
Number of Sequences: 5004
Number of extensions: 61786
Number of successful extensions: 234
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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