Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30098.Seq
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 143 1e-34
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 31 0.75
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 30 1.3
SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33) 30 1.3
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_13623| Best HMM Match : rve (HMM E-Value=0.00044) 30 1.3
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7) 29 4.0
SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023) 28 5.3
SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023) 28 5.3
SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2) 28 7.0
SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4) 28 7.0
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07) 28 7.0
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0) 27 9.2
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0) 27 9.2
SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34) 27 9.2
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12) 27 9.2
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 143 bits (346), Expect = 1e-34
Identities = 64/85 (75%), Positives = 75/85 (88%)
Frame = +1
Query: 1 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 180
+ +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP VHSR
Sbjct: 29 VGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVHSR 88
Query: 181 ARVRKNTEARRKGRHCGFGKRRGTA 255
ARVRK EAR KGRH G GKR+GTA
Sbjct: 89 ARVRKADEARSKGRHSGHGKRKGTA 113
Score = 125 bits (301), Expect = 3e-29
Identities = 60/102 (58%), Positives = 72/102 (70%)
Frame = +3
Query: 243 KRYCNARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 422
K NARMPQK +W AKKID H+YHSLYMK+KGNVFKNKRVLMEY
Sbjct: 110 KGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLMEY 169
Query: 423 IHRKKAEKARTKMLSDQAEARRNKVKEARSAARNVLPPRRRN 548
IH+KKAEKAR+K+LSDQAEARRNK K A+ + + +R++
Sbjct: 170 IHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRKD 211
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 32.3 bits (70), Expect = 0.32
Identities = 23/78 (29%), Positives = 35/78 (44%)
Frame = -2
Query: 475 AWSLSIFVLAFSAFFLWMYSMSTRLFLNTLPFAFM*SEWYRCLSIFLAVLYFRSNFLRTL 296
A S+S+ L AF ++ +S R F F S R + + ++ S LR L
Sbjct: 1874 ALSVSLRYLYLCAFCIFALYLSLRFLYLCAIFVFALSVSLRYICLCAFCIFALSVSLRYL 1933
Query: 295 CLCTHSSFCGIRALQYLF 242
CLC F +L+YL+
Sbjct: 1934 CLCAICIFAVFVSLRYLY 1951
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -3
Query: 303 EPFVFVPIVPSVAYAHCSTSSLTKATVTTLSTCLCVFADTGAGVDCYRFLDDETILDHLT 124
+P PI P+ + H ++S + T T T +F ++C F+DDE L L+
Sbjct: 238 KPQTSSPIGPTTSTQHQTSSPIGPTTSTQPQTSPPIFNAPCDKIECRHFIDDEHALSMLS 297
Query: 123 DVLS 112
+S
Sbjct: 298 PPIS 301
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 468 DQAEARRNKV--KEARSAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 602
D +RN + A + + PP +N +P ++KTKP PL ++
Sbjct: 176 DNKPVKRNNIVLSTASWSRKTSAPPSEKNAFQPPMKKTKPSSPLLTR 222
>SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33)
Length = 566
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 483 RRNKVKEA--RSAARNVLPPRRRNCCRPSLEK 572
R NK +E RS AR V P R CRP+L K
Sbjct: 528 RNNKDRECDVRSTARQVPPTTRSTSCRPALRK 559
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 483 RRNKVKEA--RSAARNVLPPRRRNCCRPSLEK 572
R NK +E RS AR V P R CRP+L K
Sbjct: 1658 RNNKDRECDVRSTARQVPPTTRSTSCRPALRK 1689
>SB_13623| Best HMM Match : rve (HMM E-Value=0.00044)
Length = 203
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 483 RRNKVKEA--RSAARNVLPPRRRNCCRPSLEK 572
R NK +E RS AR V P R CRP+L K
Sbjct: 165 RNNKDRECDVRSTARQVPPTTRSTSCRPALRK 196
>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 444 KARTKMLSDQAEARRNKVKEARSAARNVLPPRR---RNCCRPSLEKTKPRLPLRSKH 605
KA L D+ EA RN++++ A+RN L R RN R E ++ R LR +H
Sbjct: 949 KALCNRLRDRHEASRNRLRDRHEASRNRLRDRHEASRNRLRNRHEASRNR--LRDRH 1003
>SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)
Length = 381
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = -2
Query: 307 LRTLCLCTHSSFCGIRALQYLFSYQSHS---DDPFYVPLCFCGHGRGSGLL 164
LR LC C HS+ G L + Y HS LC+ GH +G L
Sbjct: 91 LRALCYCGHSAIVG-TLLLWALCYYGHSAITGTLLLRALCYYGHSAITGTL 140
>SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
Length = 186
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 396 KNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARSA--ARNVLPPRR--RNCCRPS 563
K KR + + +K +K+++K +A +RN + RSA ++ P RR R +
Sbjct: 113 KGKRSVRKSSVKKLTKKSKSKSRKSKASKKRNARRRPRSARKTKSRAPARRVKRTASKAP 172
Query: 564 LEKTKPRLPLRSK 602
++TK R R +
Sbjct: 173 AKQTKARRSRRRR 185
>SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
Length = 186
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 396 KNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARSA--ARNVLPPRR--RNCCRPS 563
K KR + + +K +K+++K +A +RN + RSA ++ P RR R +
Sbjct: 113 KGKRSVRKSSVKKLTKKSKSKSRKSKASKKRNARRRPRSARKTKSRAPARRVKRTASKAP 172
Query: 564 LEKTKPRLPLRSK 602
++TK R R +
Sbjct: 173 AKQTKARRSRRRR 185
>SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2)
Length = 465
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 124 RKMIKDGLVIKKPVAVHSR-ARVRKNTEARRKG-RHCGFGKRRGTAMRVCHRRNYGY 288
RK+IK+ + KKP H + A K E G + F +++G ++ +RN Y
Sbjct: 224 RKLIKESEMSKKPTVGHQKEAGYHKAPEREFLGEKRLLFERKKGAEKQLLQKRNENY 280
>SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)
Length = 119
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = -3
Query: 390 HYPSPSCRVSGIDACQSSWQFCTSGAIFLEPFVFVPIVPSVAYAHCSTSSLTKATVTTLS 211
H P + + ACQ ++ C S ++FL + V+ + T VT L
Sbjct: 41 HSLDPCACICHVSACQRAFVTCLSVSVFLSRVNLSRVCVLVSVSVSVTCVNLYLPVTCLR 100
Query: 210 TCLCV 196
C+C+
Sbjct: 101 ACVCL 105
>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
Length = 807
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -3
Query: 342 SSWQFCTSGAIFLEPFVFVPIVPSVAYAHC 253
++W FC G E F ++P Y HC
Sbjct: 421 AAWNFCPDGKWSWEYFDATVVIPPPPYGHC 450
>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 354 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAH 256
D + S Q C FLEP VF P+ PS A+AH
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAH 224
>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
Length = 225
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 378 AKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARSAARN 524
AK NV KNKR+ ++ + RKK + K LS Q + + ++ R A N
Sbjct: 61 AKANVKKNKRIALQALKRKKRLE---KQLS-QIDGTLSTIEFQRDALEN 105
>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
Length = 225
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 378 AKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARSAARN 524
AK NV KNKR+ ++ + RKK + K LS Q + + ++ R A N
Sbjct: 61 AKANVKKNKRIALQALKRKKRLE---KQLS-QIDGTLSTIEFQRDALEN 105
>SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)
Length = 736
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 393 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARSAARNVLP 533
F+ + MEY + EKA K+ Q++A R K+ + A ++P
Sbjct: 80 FQKAKEAMEYARKSATEKAAEKIQDIQSQAARIKLTVSIQAPFIIIP 126
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 381 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARSAARNVLP 533
K NK E + K +TK D+ + +NK KE ++A R + P
Sbjct: 496 KDKTKNNKDKTKENKDKTNENKDKTKENKDKTKENKNKTKENKTANRPLTP 546
>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
Length = 1206
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 369 RVSGIDACQSSWQFCTSGAIFLEPFVF 289
RV+G+ S WQ CT+ A L+ VF
Sbjct: 493 RVAGVKKSPSRWQQCTNAANNLDGLVF 519
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/74 (20%), Positives = 30/74 (40%)
Frame = +3
Query: 339 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARSAA 518
+ R Y +LY KGN F + L++ E+ R K + ++++ +
Sbjct: 70 EFQRKRYGNLYQLLKGNTFTDAEDLVKLWDAAHYEEERAKKRKPLTPLAKFRIRQRFTPP 129
Query: 519 RNVLPPRRRNCCRP 560
+ + P R+ P
Sbjct: 130 KTICPKGRQKSTLP 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,486,295
Number of Sequences: 59808
Number of extensions: 420329
Number of successful extensions: 1394
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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