Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30097.Seq
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 29 0.73
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom... 27 2.2
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 2.2
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 27 3.0
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 6.8
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 9.0
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.0
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 9.0
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.0
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 28.7 bits (61), Expect = 0.73
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +1
Query: 421 PATMAAPRAVLSIMRGRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRAS 600
P T AP + +S++ + +P + + +ELSS P+L ++S L P PPR S
Sbjct: 342 PYTHIAPASEMSLIPEKPR-LPPRPSHTLSELSS-PALTSENLSSKPSPLFPPPPPRVKS 399
Query: 601 GDTRPP 618
T P
Sbjct: 400 LATNKP 405
>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 158
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 485 GIPVIRPLMMESTALGAAIVAGRAMRVW 402
GIP+I P+ L A+ + RA ++W
Sbjct: 131 GIPIIDPVTRAPAVLAGAVSSSRAKQMW 158
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 290 WTDTKNEHVNAENQIELLQFCRRDFFSSEPPY 195
W +T+N + N +E+L R+ S P Y
Sbjct: 764 WANTENARYSTSNALEILDMLLREKIESAPRY 795
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 26.6 bits (56), Expect = 3.0
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Frame = +1
Query: 388 GIVVGHTRIARPATMAAPRAVLSIMRGRMTGIPSKSACICT------ELSS-APSLRRRG 546
G++VG+T + RP T+ + V G ++G P K + T LSS P + G
Sbjct: 330 GVIVGNTTVQRPKTLKSTSHVEE--TGGLSGPPLKPIALNTLRTLRKHLSSDIPIIGCGG 387
Query: 547 VASGARSLQPSR 582
++SG +++ +R
Sbjct: 388 ISSGKDAIEYAR 399
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 553 RQLLADGGMAQNSVLCRCRLIYWVYQSFVPS*WK 452
+++ +D +Q +V R L+ W++ S PS WK
Sbjct: 162 QRIFSDLQFSQKTVDYRLSLLRWIHLSSWPSNWK 195
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 363 QECIGRWAGYCRGPHTHCATC 425
QEC+ W G+ + THC C
Sbjct: 36 QECLVEWLGHSK--KTHCELC 54
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 379 GGLGIVVGHTRIARPATMAAPRAVLSIMRGRMTGIPSKSACI-CTELSSAPSL 534
GGLG V T I + P S + ++TG S++A T L++ P +
Sbjct: 52 GGLGFDVARTGIGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGV 104
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 520 SAPSLRR-RGVASGARSLQPSRPPRRASGDTRPPARP 627
+APS+ R GA S QP+ R +S T PP P
Sbjct: 876 AAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPP 912
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 288 PSHAFIQGFFPTNSPHFSFF-IGKSRQECIGRWAGYCRGPHT 410
PS + Q F+P S S + +GK+ Q G + Y G T
Sbjct: 410 PSTVYHQVFYPPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQT 451
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 386 WVLSWATHALRDLRQWPPPGLYF 454
W L+ A D+R WPP ++F
Sbjct: 403 WTLTDLADAFLDVRLWPPIFMFF 425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,600
Number of Sequences: 5004
Number of extensions: 53332
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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