Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30097.Seq
(631 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5) 46 3e-05
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51) 46 3e-05
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36) 29 4.1
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_16259| Best HMM Match : AAA (HMM E-Value=0.43) 28 7.2
SB_14677| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 28 7.2
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2) 27 9.5
SB_53612| Best HMM Match : SRCR (HMM E-Value=0) 27 9.5
SB_43376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
Length = 85
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = -3
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
+Q+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 25 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62
>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
Length = 137
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = -3
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
+Q+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 25 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62
>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = -3
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
+Q+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 436 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 473
Score = 34.7 bits (76), Expect = 0.063
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 628 RAALEAVCHQTR-XXXXXXXXXXAPLRQLLADGGMAQNSVL 509
RA LEAVC QTR PL LL DGGM N +L
Sbjct: 395 RATLEAVCFQTRELLDAMNEDCGIPLASLLVDGGMTVNRLL 435
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Frame = +1
Query: 403 HTRIARPATMAAPRAVLSIMRGRMTGIPSKSACICTELSS---------APSLRRRGVAS 555
H + P +A P ++S+ G ++G + + T S PS R +
Sbjct: 1637 HPSMLMPHPLAMPGLMMSMSSGMISGSNTSTTTTATSSRSRDPDSSPYRTPSDRSSPLTV 1696
Query: 556 GARSLQPSRPPRRASGDTRPPAR 624
G RS +P PPR R P R
Sbjct: 1697 GGRSSRPRSPPRLMEPRPRSPVR 1719
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 626 GRAGGRVSPDARRGGRDGCRLRAPEATPRRRRDGAELSSVQMQADLLG 483
GR GGR+ A R GR+G R+++ R R+G + S+ ++ G
Sbjct: 1781 GRNGGRMKSLANRSGRNGGRMKS--LAHRSMRNGGRMKSLAHRSSRKG 1826
>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 402
+++ + L G + RP + + LGAA +AG A VW
Sbjct: 21 MELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVW 56
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = -3
Query: 626 GRAGGRVSPDARRGGRDGCRLRAPEATPRR 537
GR GGR RGGR G R A EA+P R
Sbjct: 421 GRGGGRGG--GGRGGRGGLRGEASEASPNR 448
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +3
Query: 363 QECIGRW--AGYCRGPHTHCATC 425
QEC+GRW A + RG H C C
Sbjct: 26 QECLGRWNVAQFFRGRHPTCPHC 48
>SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)
Length = 924
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +1
Query: 466 GRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPARP 627
GR + + + C ++AP + + G G + PS PP + T P P
Sbjct: 840 GRESTVSLRDLAPCPPQNTAPQMSQEGTFQGQAAPTPSTPPTDSGLKTPAPILP 893
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 508 TELSSAPSLRRRGVASGARSLQPSRPP 588
T L++ PS R+ G +S A++ +PS PP
Sbjct: 3156 TVLTTLPSSRQAGTSSTAKATRPSVPP 3182
>SB_16259| Best HMM Match : AAA (HMM E-Value=0.43)
Length = 538
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 543 SPTEGWRRTQFCADAG*FTGYTSHSSPHDGKYSPGGGHCRRSRNACVAHD 394
SP G+R T F G T + +S H + S G RNACV+ D
Sbjct: 484 SPYLGFRSTSF-TPLG--TAFAYMASVHTRRTSSRGNRLNMRRNACVSQD 530
>SB_14677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +1
Query: 466 GRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPARP 627
GR + + + C ++AP + + G G + P+ PP + T P P
Sbjct: 244 GRESTVSLRDLASCPPQNTAPQMSQEGTFQGQAAPTPTTPPTDSGLKTPAPILP 297
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 502 CRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCRLLPMKNEKCGEF 323
CR + +Q VP+ + Q WG + + +C +Q R H +LL + +CGE+
Sbjct: 290 CRQVAVYHQRGVPT-LEEQEWGVGVVEEYKCPTCSQQIRFPRYNHPAKLLETRCGRCGEW 348
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 385 LGIVVGHTRIARPATMAAPRAVLSIMRGRMTGI 483
+G+ + HTR+A + A VLSI R R+ G+
Sbjct: 1618 VGLSIHHTRLADVSIHHARLGVLSIHRSRLVGL 1650
>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 351 GKSRQECIGRWAGYCRGPHTHCAT 422
G + Q C G AGYC P HC T
Sbjct: 751 GSAAQHC-GTNAGYCGIPSNHCGT 773
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 387 GYCRGPHTHCATCDNGRPQGCTFHHEG 467
G C+ C TC P+ CTF +G
Sbjct: 470 GICKSCDPGCTTCSTSDPKKCTFCAKG 496
>SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)
Length = 1037
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 517 SSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPAR 624
+S+ + RRR +A ARSL S P R G P R
Sbjct: 632 ASSRAQRRRSLAHSARSLPGSMPSDRDLGRKNPQGR 667
>SB_53612| Best HMM Match : SRCR (HMM E-Value=0)
Length = 409
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +1
Query: 406 TRIARPATMAAPRAVLSIMRGRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRP 585
T+++ P + +AP A +I++ ++ G+ S ++ T S+P +R A+ A S QPS P
Sbjct: 342 TQLSTPES-SAP-ADEAILKMKLQGLASSASTPATP-DSSPKRKRTRQANSASSSQPSSP 398
>SB_43376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +1
Query: 466 GRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPARP 627
GR + + + C ++AP + + G G + P+ PP + T P P
Sbjct: 112 GRESTVSLRDLAPCPPQNTAPQMSQEGTFQGQAAPTPTTPPTDSGLKTPAPILP 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,993,027
Number of Sequences: 59808
Number of extensions: 456669
Number of successful extensions: 1257
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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