Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30090.Seq
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0661 - 16726958-16726966,16727133-16727234                       47   8e-06
01_02_0115 - 11248021-11248101,11249017-11249118                       47   8e-06
06_03_0336 + 19671500-19672150,19672681-19673301                       29   2.2  
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210...    28   2.9  

>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = +3

Query: 165 MAKXXNHTNHNQNRKAHRNGIKKPRKTR 248
           MAK  NHT HNQ+ KAH+NGIKKP++ R
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHR 28


>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = +3

Query: 165 MAKXXNHTNHNQNRKAHRNGIKKPRKTR 248
           MAK  NHT HNQ+ KAH+NGIKKP++ R
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHR 28



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +2

Query: 227 QKAKEDQARTTLGMDPKFLRNQRFCKKGNLK 319
           +K K  +  +T GMDPKFLRNQR+ +K N K
Sbjct: 22  KKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52


>06_03_0336 + 19671500-19672150,19672681-19673301
          Length = 423

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 262 WHGSKIFKESKVLQEGXPEASQATREGG 345
           WH    FK S+    G PEA+ A  EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250


>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
            20921184-20921263,20922759-20922875,20923089-20923136,
            20923509-20923601,20923881-20923958,20924114-20924218,
            20924543-20925212,20925253-20925350,20925887-20925963,
            20926035-20926117,20926208-20926287,20927060-20927139,
            20927698-20927743,20928709-20929181,20929234-20929579
          Length = 2139

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 6/28 (21%)
 Frame = -1

Query: 308  PSCKT------FDSLKILDPCQGWFVPG 243
            P+C+T      F+S+K+L PC+ W V G
Sbjct: 1448 PNCRTEKLYSYFESIKLLFPCEQWMVNG 1475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,034,245
Number of Sequences: 37544
Number of extensions: 149631
Number of successful extensions: 321
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)