Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30090.Seq
(437 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29 pro... 52 7e-07
U49083-1|AAC50647.1| 159|Homo sapiens HIP protein. 52 7e-07
U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29 pro... 52 7e-07
BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29 p... 52 7e-07
BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29 p... 52 7e-07
BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29 p... 52 7e-07
BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29 p... 52 7e-07
BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29 p... 52 7e-07
AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA seq... 52 7e-07
>Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 52.4 bits (120), Expect = 7e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 165 MAKXXNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAK NHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +2
Query: 212 SQKWYQ----KAKEDQARTTLGMDPKFLRNQRFCKKGNLKPAKQL 334
S+KW++ K + + + G+DPKFLRN RF KK N K K++
Sbjct: 13 SRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U49083-1|AAC50647.1| 159|Homo sapiens HIP protein.
Length = 159
Score = 52.4 bits (120), Expect = 7e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 165 MAKXXNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAK NHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +2
Query: 212 SQKWYQ----KAKEDQARTTLGMDPKFLRNQRFCKKGNLKPAKQL 334
S+KW++ K + + + G+DPKFLRN RF KK N K K++
Sbjct: 13 SRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 52.4 bits (120), Expect = 7e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 165 MAKXXNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAK NHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +2
Query: 212 SQKWYQ----KAKEDQARTTLGMDPKFLRNQRFCKKGNLKPAKQL 334
S+KW++ K + + + G+DPKFLRN RF KK N K K++
Sbjct: 13 SRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29
protein.
Length = 161
Score = 52.4 bits (120), Expect = 7e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 165 MAKXXNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAK NHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +2
Query: 212 SQKWYQ----KAKEDQARTTLGMDPKFLRNQRFCKKGNLKPAKQL 334
S+KW++ K + + + G+DPKFLRN RF KK N K K++
Sbjct: 13 SRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 52.4 bits (120), Expect = 7e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 165 MAKXXNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAK NHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +2
Query: 212 SQKWYQ----KAKEDQARTTLGMDPKFLRNQRFCKKGNLKPAKQL 334
S+KW++ K + + + G+DPKFLRN RF KK N K K++
Sbjct: 13 SRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 52.4 bits (120), Expect = 7e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 165 MAKXXNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAK NHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +2
Query: 212 SQKWYQ----KAKEDQARTTLGMDPKFLRNQRFCKKGNLKPAKQL 334
S+KW++ K + + + G+DPKFLRN RF KK N K K++
Sbjct: 13 SRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 52.4 bits (120), Expect = 7e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 165 MAKXXNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAK NHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +2
Query: 212 SQKWYQ----KAKEDQARTTLGMDPKFLRNQRFCKKGNLKPAKQL 334
S+KW++ K + + + G+DPKFLRN RF KK N K K++
Sbjct: 13 SRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 52.4 bits (120), Expect = 7e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 165 MAKXXNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAK NHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +2
Query: 212 SQKWYQ----KAKEDQARTTLGMDPKFLRNQRFCKKGNLKPAKQL 334
S+KW++ K + + + G+DPKFLRN RF KK N K K++
Sbjct: 13 SRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA
sequence from clone RP11-632C17 on chromosome 6 Contains
the gene for a novel protein similar to ribosomal
protein L29 ).
Length = 172
Score = 52.4 bits (120), Expect = 7e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 165 MAKXXNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAK NHT HNQ+RK HRNGIKKPR R+E
Sbjct: 16 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 45
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +2
Query: 212 SQKWYQ----KAKEDQARTTLGMDPKFLRNQRFCKKGNLKPAKQL 334
S+KW++ K + + + G+DPKFLRN RF KK N K K++
Sbjct: 28 SRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 72
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,984,883
Number of Sequences: 237096
Number of extensions: 834049
Number of successful extensions: 1720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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