Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30080.Seq
(853 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68760-13|CAD30434.1| 423|Caenorhabditis elegans Hypothetical p... 35 0.084
AL032641-7|CAD30455.1| 423|Caenorhabditis elegans Hypothetical ... 35 0.084
Z68760-12|CAD27623.1| 436|Caenorhabditis elegans Hypothetical p... 32 0.45
Z68760-11|CAA92997.2| 438|Caenorhabditis elegans Hypothetical p... 32 0.45
X68070-1|CAA48207.1| 438|Caenorhabditis elegans Lin-3 protein. 32 0.45
AL032641-6|CAD27613.1| 436|Caenorhabditis elegans Hypothetical ... 32 0.45
AL032641-5|CAA21649.2| 438|Caenorhabditis elegans Hypothetical ... 32 0.45
Z68760-15|CAL44969.1| 462|Caenorhabditis elegans Hypothetical p... 29 4.2
AL032641-9|CAL44964.1| 462|Caenorhabditis elegans Hypothetical ... 29 4.2
Z78413-5|CAB01661.2| 243|Caenorhabditis elegans Hypothetical pr... 29 5.5
>Z68760-13|CAD30434.1| 423|Caenorhabditis elegans Hypothetical
protein F36H1.4c protein.
Length = 423
Score = 34.7 bits (76), Expect = 0.084
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 322 CPSGWERLRL*RAWXQACLCPLSGLFGPSX*APSPAXALL 203
CP GWE R R + QA P++G + S + PA A L
Sbjct: 184 CPQGWEGTRCDRHYVQAFYAPINGRYNQSSTSAIPAFAFL 223
>AL032641-7|CAD30455.1| 423|Caenorhabditis elegans Hypothetical
protein F36H1.4c protein.
Length = 423
Score = 34.7 bits (76), Expect = 0.084
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 322 CPSGWERLRL*RAWXQACLCPLSGLFGPSX*APSPAXALL 203
CP GWE R R + QA P++G + S + PA A L
Sbjct: 184 CPQGWEGTRCDRHYVQAFYAPINGRYNQSSTSAIPAFAFL 223
>Z68760-12|CAD27623.1| 436|Caenorhabditis elegans Hypothetical
protein F36H1.4b protein.
Length = 436
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 322 CPSGWERLRL*RAWXQACLCPLSGLFGPSX*APSPAXALLTHQEXRSHRP 173
CP GWE R R + QA P++G + S LL Q S P
Sbjct: 182 CPQGWEGTRCDRHYVQAFYAPINGRYNVRLSTMSSTAQLLVQQSSTSAIP 231
>Z68760-11|CAA92997.2| 438|Caenorhabditis elegans Hypothetical
protein F36H1.4a protein.
Length = 438
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 322 CPSGWERLRL*RAWXQACLCPLSGLFGPSX*APSPAXALLTHQEXRSHRP 173
CP GWE R R + QA P++G + S LL Q S P
Sbjct: 184 CPQGWEGTRCDRHYVQAFYAPINGRYNVRLSTMSSTAQLLVQQSSTSAIP 233
>X68070-1|CAA48207.1| 438|Caenorhabditis elegans Lin-3 protein.
Length = 438
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 322 CPSGWERLRL*RAWXQACLCPLSGLFGPSX*APSPAXALLTHQEXRSHRP 173
CP GWE R R + QA P++G + S LL Q S P
Sbjct: 184 CPQGWEGTRCDRHYVQAFYAPINGRYNVRLSTMSSTAQLLVQQSSTSAIP 233
>AL032641-6|CAD27613.1| 436|Caenorhabditis elegans Hypothetical
protein F36H1.4b protein.
Length = 436
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 322 CPSGWERLRL*RAWXQACLCPLSGLFGPSX*APSPAXALLTHQEXRSHRP 173
CP GWE R R + QA P++G + S LL Q S P
Sbjct: 182 CPQGWEGTRCDRHYVQAFYAPINGRYNVRLSTMSSTAQLLVQQSSTSAIP 231
>AL032641-5|CAA21649.2| 438|Caenorhabditis elegans Hypothetical
protein F36H1.4a protein.
Length = 438
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 322 CPSGWERLRL*RAWXQACLCPLSGLFGPSX*APSPAXALLTHQEXRSHRP 173
CP GWE R R + QA P++G + S LL Q S P
Sbjct: 184 CPQGWEGTRCDRHYVQAFYAPINGRYNVRLSTMSSTAQLLVQQSSTSAIP 233
>Z68760-15|CAL44969.1| 462|Caenorhabditis elegans Hypothetical
protein F36H1.4d protein.
Length = 462
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 322 CPSGWERLRL*RAWXQACLCPLSGLF 245
CP GWE R R + QA P++G +
Sbjct: 182 CPQGWEGTRCDRHYVQAFYAPINGRY 207
>AL032641-9|CAL44964.1| 462|Caenorhabditis elegans Hypothetical
protein F36H1.4d protein.
Length = 462
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 322 CPSGWERLRL*RAWXQACLCPLSGLF 245
CP GWE R R + QA P++G +
Sbjct: 182 CPQGWEGTRCDRHYVQAFYAPINGRY 207
>Z78413-5|CAB01661.2| 243|Caenorhabditis elegans Hypothetical
protein T01C3.5 protein.
Length = 243
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 561 DGAERSRFHQDHRVXLVRHRXGPAFLLXNRGK--RXFDPKIPASDKNRXEIQFDQE 722
DG + F +V + + GPA + N GK R PK+ A + ++QF+ +
Sbjct: 79 DGTDLETFDLLPQVEQILNPDGPAIIFKNNGKLQRILMPKLLALNGKDEDVQFEND 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,742,181
Number of Sequences: 27780
Number of extensions: 216384
Number of successful extensions: 319
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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