Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30080.Seq
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28770.1 68416.m03591 expressed protein                             29   5.2  
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot...    28   9.1  

>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 205 KARXQAKGLXKXDQXGRKEDKG-KPEXKPAKGVTVPTRKGIKETQNVKSQXIKSGEQQK 378
           + R + + +    +   K +KG K E K AK V     K +  T+N      +SGE  K
Sbjct: 767 RVRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNK 825


>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
           low similarity to kinase [Gallus gallus] GI:1370092;
           contains Pfam profile PF00439: Bromodomain
          Length = 678

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 645 NRGKRXFDPKIPASDKNRXEIQFDQEGK 728
           N+G++   PK  A D N+ E+  D++GK
Sbjct: 454 NKGRKGKLPKPKAKDPNKREMTMDEKGK 481


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,136,114
Number of Sequences: 28952
Number of extensions: 208039
Number of successful extensions: 303
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)