Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30079.Seq
         (413 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24333 Cluster: Elastin like protein; n=1; Drosophila m...    36   0.43 
UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1; Planta...    35   0.76 
UniRef50_Q5C0A4 Cluster: SJCHGC09205 protein; n=1; Schistosoma j...    35   0.76 
UniRef50_Q4YAZ4 Cluster: Putative uncharacterized protein; n=1; ...    31   9.3  

>UniRef50_Q24333 Cluster: Elastin like protein; n=1; Drosophila
          melanogaster|Rep: Elastin like protein - Drosophila
          melanogaster (Fruit fly)
          Length = 110

 Score = 35.5 bits (78), Expect = 0.43
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +2

Query: 2  VAAALEGVDXPGCRNSARE 58
          VAAALE VD PGCRNSAR+
Sbjct: 6  VAAALELVDPPGCRNSARD 24


>UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1;
          Plantago major|Rep: Plasma memebrane H+-ATPase -
          Plantago major (Common plantain)
          Length = 106

 Score = 34.7 bits (76), Expect = 0.76
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +2

Query: 2  VAAALEGVDXPGCRNSAR 55
          VAAALE VD PGCRNSAR
Sbjct: 7  VAAALELVDPPGCRNSAR 24


>UniRef50_Q5C0A4 Cluster: SJCHGC09205 protein; n=1; Schistosoma
          japonicum|Rep: SJCHGC09205 protein - Schistosoma
          japonicum (Blood fluke)
          Length = 215

 Score = 34.7 bits (76), Expect = 0.76
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +2

Query: 2  VAAALEGVDXPGCRNSAR 55
          VAAALE VD PGCRNSAR
Sbjct: 7  VAAALELVDPPGCRNSAR 24


>UniRef50_Q4YAZ4 Cluster: Putative uncharacterized protein; n=1;
          Plasmodium berghei|Rep: Putative uncharacterized
          protein - Plasmodium berghei
          Length = 89

 Score = 31.1 bits (67), Expect = 9.3
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +2

Query: 2  VAAALEGVDXPGCRNS 49
          VAAALE VD PGCRNS
Sbjct: 13 VAAALELVDPPGCRNS 28


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 331,840,743
Number of Sequences: 1657284
Number of extensions: 5264884
Number of successful extensions: 7778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7773
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19042509735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)