Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0768.Seq
         (284 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   0.48 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   1.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   2.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    20   4.5  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    20   5.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   5.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 0.48
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = +3

Query: 27  PTGIIMXPXWNCSPDLNPRXHIXGARASRGLVRRXCRQPPGGPSAVCLXPDHXPGSYCXT 206
           P G++      C P L  +  I  AR     ++  C +P       C  P H PG  C T
Sbjct: 56  PIGVLYCMKCECVP-LQKKRRIV-ARVQCRSIKNECPEP------TCDEPVHRPGRCCKT 107


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 138 QPPGGPSA 161
           QPPGGPS+
Sbjct: 535 QPPGGPSS 542


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 213 PRPWSTADCVSPKPGSRL 266
           P    T DC SP P  +L
Sbjct: 39  PNQQYTKDCSSPTPSDKL 56


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 94  VEPVPPGA*SVDXAVSHQAGPRPSVCXLTT 183
           VEPVP     V    S    P P    LTT
Sbjct: 390 VEPVPQPVEEVTQKPSSTKAPAPPSRDLTT 419


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 259 DPGFGETQSAVDHGLGPI 206
           D G G T++ + H LG I
Sbjct: 86  DTGIGMTKADLVHNLGTI 103


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 150 GPSAVCLXPDHXPGSYCXT 206
           G S  C   D   GSYC T
Sbjct: 165 GNSHRCHCSDGYSGSYCQT 183


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,234
Number of Sequences: 336
Number of extensions: 1285
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4897022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)