Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0768.Seq
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   1.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   1.6  
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    24   4.9  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    23   8.5  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    23   8.5  

>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 180 HXPGSYCXTIGPRPWSTAD 236
           H P S C  +G  PW+T+D
Sbjct: 275 HGPCSDCIYVGNLPWATSD 293


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 249 LGKHNR--PSTMVSDQSXCNKILGRGQXADRRPRARLVA 139
           +GK N   P  + S     +  +GRG+ AD+RP  R +A
Sbjct: 347 IGKENFFIPGEVTSGADFGSIYVGRGRQADQRPNNREIA 385


>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = -3

Query: 177 QXADRRPRARLVADGXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           +  D+  +  ++ D  +   +  + G H ++ GD + GC S
Sbjct: 21  EQVDQNSQVSVIVD-LVGNDANAKRGFHIHQFGDNTNGCTS 60


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 242 NTIGRRPWSRTNRXAIRSWXVVRXQTD 162
           N +GR P++ TN      W V    TD
Sbjct: 349 NELGRNPYNTTNVLRAILWLVKAWTTD 375


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 161  GRGPAWWLT 135
            G+ P+WWLT
Sbjct: 1485 GKNPSWWLT 1493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,107,457
Number of Sequences: 5004
Number of extensions: 18043
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)