SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0768.Seq
         (284 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113179-1|AAM50090.1|  274|Homo sapiens superoxide dismutase co...    48   4e-06
CR541928-1|CAG46726.1|  274|Homo sapiens CCS protein.                  47   1e-05
BC112055-1|AAI12056.1|  274|Homo sapiens copper chaperone for su...    47   1e-05
BC105016-1|AAI05017.1|  274|Homo sapiens copper chaperone for su...    47   1e-05
AF002210-1|AAC51764.1|  274|Homo sapiens copper chaperone for su...    47   1e-05
X02317-1|CAA26182.1|  154|Homo sapiens protein ( Human mRNA for ...    35   0.042
L44139-2|AAB05662.1|  154|Homo sapiens Cu/Zn-superoxide dismutas...    35   0.042
L44139-1|AAB05661.1|  154|Homo sapiens Cu/Zn-superoxide dismutas...    35   0.042
EF151142-1|ABL96616.1|  154|Homo sapiens superoxide dismutase 1 ...    35   0.042
CR541742-1|CAG46542.1|  154|Homo sapiens SOD1 protein.                 35   0.042
CR450355-1|CAG29351.1|  154|Homo sapiens SOD1 protein.                 35   0.042
BT006676-1|AAP35322.1|  154|Homo sapiens superoxide dismutase 1,...    35   0.042
BC001034-1|AAH01034.1|  154|Homo sapiens superoxide dismutase 1,...    35   0.042
AY835629-1|AAV80422.1|  154|Homo sapiens superoxide dismutase 1,...    35   0.042
AY450286-1|AAR21563.1|  154|Homo sapiens superoxide dismutase pr...    35   0.042
AY049787-1|AAL15444.1|  154|Homo sapiens soluble superoxide dism...    35   0.042
U10116-1|AAA62278.1|  240|Homo sapiens superoxide dismutase prot...    30   1.6  
J02947-1|AAA66000.1|  240|Homo sapiens SOD3 protein.                   30   1.6  
CR541853-1|CAG46651.1|  240|Homo sapiens SOD3 protein.                 30   1.6  
BC034918-1|AAH34918.1|  167|Homo sapiens C9orf45 protein protein.      30   1.6  
BC014418-1|AAH14418.1|  240|Homo sapiens superoxide dismutase 3,...    30   1.6  
AY787834-1|AAV40827.1|  240|Homo sapiens superoxide dismutase 3,...    30   1.6  
AL365338-2|CAH70297.1|  167|Homo sapiens chromosome 9 open readi...    30   1.6  
AF251293-1|AAG44593.1|  167|Homo sapiens GL012 protein.                30   1.6  
BC100967-1|AAI00968.1|  193|Homo sapiens chromosome 17 open read...    29   2.1  
D84239-1|BAA19526.1| 5405|Homo sapiens IgG Fc binding protein pr...    29   2.7  
AY236486-1|AAP74806.1|  245|Homo sapiens proliferation-inducing ...    29   2.7  
AC007842-1|AAD39266.1| 2843|Homo sapiens Human Fc gamma BP [AA 1...    29   2.7  
X01781-1|CAA25916.1|   32|Homo sapiens protein ( Human superoxid...    29   3.6  
BC009448-1|AAH09448.2|  193|Homo sapiens chromosome 17 open read...    28   4.8  
BC100965-1|AAI00966.1|  193|Homo sapiens chromosome 17 open read...    28   6.3  
BC100964-1|AAI00965.2|  193|Homo sapiens chromosome 17 open read...    28   6.3  
L46374-1|AAB59626.1|   32|Homo sapiens superoxide dismutase prot...    27   8.3  
BC069017-1|AAH69017.1|  364|Homo sapiens rhomboid domain contain...    27   8.3  
BC033066-1|AAH33066.1|  539|Homo sapiens F-box and leucine-rich ...    27   8.3  
BC006234-1|AAH06234.2|  233|Homo sapiens RHBDD2 protein protein.       27   8.3  
AL031847-3|CAI19439.1|  180|Homo sapiens hairy and enhancer of s...    27   8.3  
AK223088-1|BAD96808.1|  533|Homo sapiens F-box and leucine-rich ...    27   8.3  
AK123170-1|BAC85547.1|  330|Homo sapiens protein ( Homo sapiens ...    27   8.3  
AK026590-1|BAB15503.1|  223|Homo sapiens protein ( Homo sapiens ...    27   8.3  
AK026541-1|BAB15499.1|  533|Homo sapiens protein ( Homo sapiens ...    27   8.3  
AC005067-2|AAD45960.1|  364|Homo sapiens WUGSC:H_RG122E10.2b pro...    27   8.3  

>AY113179-1|AAM50090.1|  274|Homo sapiens superoxide dismutase
           copper chaperone protein.
          Length = 274

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = -3

Query: 150 RLVADGXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           R + DG IDGL PG HGLH ++ GDL+  CNS
Sbjct: 112 RCLIDGTIDGLEPGLHGLHVHQYGDLTNNCNS 143


>CR541928-1|CAG46726.1|  274|Homo sapiens CCS protein.
          Length = 274

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -3

Query: 150 RLVADGXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           R + +G IDGL PG HGLH ++ GDL+  CNS
Sbjct: 112 RCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNS 143


>BC112055-1|AAI12056.1|  274|Homo sapiens copper chaperone for
           superoxide dismutase protein.
          Length = 274

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -3

Query: 150 RLVADGXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           R + +G IDGL PG HGLH ++ GDL+  CNS
Sbjct: 112 RCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNS 143


>BC105016-1|AAI05017.1|  274|Homo sapiens copper chaperone for
           superoxide dismutase protein.
          Length = 274

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -3

Query: 150 RLVADGXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           R + +G IDGL PG HGLH ++ GDL+  CNS
Sbjct: 112 RCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNS 143


>AF002210-1|AAC51764.1|  274|Homo sapiens copper chaperone for
           superoxide dismutase protein.
          Length = 274

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -3

Query: 150 RLVADGXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           R + +G IDGL PG HGLH ++ GDL+  CNS
Sbjct: 112 RCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNS 143


>X02317-1|CAA26182.1|  154|Homo sapiens protein ( Human mRNA for
           Cu/Zn superoxide dismutase (SOD). ).
          Length = 154

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           G I GL+ G HG H +E GD + GC S
Sbjct: 34  GSIKGLTEGLHGFHVHEFGDNTAGCTS 60


>L44139-2|AAB05662.1|  154|Homo sapiens Cu/Zn-superoxide dismutase
           protein.
          Length = 154

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           G I GL+ G HG H +E GD + GC S
Sbjct: 34  GSIKGLTEGLHGFHVHEFGDNTAGCTS 60


>L44139-1|AAB05661.1|  154|Homo sapiens Cu/Zn-superoxide dismutase
           protein.
          Length = 154

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           G I GL+ G HG H +E GD + GC S
Sbjct: 34  GSIKGLTEGLHGFHVHEFGDNTAGCTS 60


>EF151142-1|ABL96616.1|  154|Homo sapiens superoxide dismutase 1
           protein.
          Length = 154

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           G I GL+ G HG H +E GD + GC S
Sbjct: 34  GSIKGLTEGLHGFHVHEFGDNTAGCTS 60


>CR541742-1|CAG46542.1|  154|Homo sapiens SOD1 protein.
          Length = 154

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           G I GL+ G HG H +E GD + GC S
Sbjct: 34  GSIKGLTEGLHGFHVHEFGDNTAGCTS 60


>CR450355-1|CAG29351.1|  154|Homo sapiens SOD1 protein.
          Length = 154

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           G I GL+ G HG H +E GD + GC S
Sbjct: 34  GSIKGLTEGLHGFHVHEFGDNTAGCTS 60


>BT006676-1|AAP35322.1|  154|Homo sapiens superoxide dismutase 1,
           soluble (amyotrophic lateral sclerosis 1 (adult))
           protein.
          Length = 154

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           G I GL+ G HG H +E GD + GC S
Sbjct: 34  GSIKGLTEGLHGFHVHEFGDNTAGCTS 60


>BC001034-1|AAH01034.1|  154|Homo sapiens superoxide dismutase 1,
           soluble (amyotrophic lateral sclerosis 1 (adult))
           protein.
          Length = 154

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           G I GL+ G HG H +E GD + GC S
Sbjct: 34  GSIKGLTEGLHGFHVHEFGDNTAGCTS 60


>AY835629-1|AAV80422.1|  154|Homo sapiens superoxide dismutase 1,
           soluble (amyotrophic lateral sclerosis 1 (adult))
           protein.
          Length = 154

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           G I GL+ G HG H +E GD + GC S
Sbjct: 34  GSIKGLTEGLHGFHVHEFGDNTAGCTS 60


>AY450286-1|AAR21563.1|  154|Homo sapiens superoxide dismutase
           protein.
          Length = 154

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           G I GL+ G HG H +E GD + GC S
Sbjct: 34  GSIKGLTEGLHGFHVHEFGDNTAGCTS 60


>AY049787-1|AAL15444.1|  154|Homo sapiens soluble superoxide
           dismutase 1 protein.
          Length = 154

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           G I GL+ G HG H +E GD + GC S
Sbjct: 34  GSIKGLTEGLHGFHVHEFGDNTAGCTS 60


>U10116-1|AAA62278.1|  240|Homo sapiens superoxide dismutase
           protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 159 PRARLVADGXIDGL----SPGRHGLHXYEXGDLSQGCNS 55
           PRA+L A   ++G     +     +H ++ GDLSQGC S
Sbjct: 89  PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCES 127


>J02947-1|AAA66000.1|  240|Homo sapiens SOD3 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 159 PRARLVADGXIDGL----SPGRHGLHXYEXGDLSQGCNS 55
           PRA+L A   ++G     +     +H ++ GDLSQGC S
Sbjct: 89  PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCES 127


>CR541853-1|CAG46651.1|  240|Homo sapiens SOD3 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 159 PRARLVADGXIDGL----SPGRHGLHXYEXGDLSQGCNS 55
           PRA+L A   ++G     +     +H ++ GDLSQGC S
Sbjct: 89  PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCES 127


>BC034918-1|AAH34918.1|  167|Homo sapiens C9orf45 protein protein.
          Length = 167

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 57  NCSPDLN-PRX-HIXGARASRGLVRRXCRQPPGG 152
           NC P    PR  H+ G + S G +R  C QPPGG
Sbjct: 71  NCRPPTRGPRSLHLPGTKGSSGSLRS-CLQPPGG 103


>BC014418-1|AAH14418.1|  240|Homo sapiens superoxide dismutase 3,
           extracellular protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 159 PRARLVADGXIDGL----SPGRHGLHXYEXGDLSQGCNS 55
           PRA+L A   ++G     +     +H ++ GDLSQGC S
Sbjct: 89  PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCES 127


>AY787834-1|AAV40827.1|  240|Homo sapiens superoxide dismutase 3,
           extracellular protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 159 PRARLVADGXIDGL----SPGRHGLHXYEXGDLSQGCNS 55
           PRA+L A   ++G     +     +H ++ GDLSQGC S
Sbjct: 89  PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCES 127


>AL365338-2|CAH70297.1|  167|Homo sapiens chromosome 9 open reading
           frame 45 protein.
          Length = 167

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 57  NCSPDLN-PRX-HIXGARASRGLVRRXCRQPPGG 152
           NC P    PR  H+ G + S G +R  C QPPGG
Sbjct: 71  NCRPPTRGPRSLHLPGTKGSSGSLRS-CLQPPGG 103


>AF251293-1|AAG44593.1|  167|Homo sapiens GL012 protein.
          Length = 167

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 57  NCSPDLN-PRX-HIXGARASRGLVRRXCRQPPGG 152
           NC P    PR  H+ G + S G +R  C QPPGG
Sbjct: 71  NCRPPTRGPRSLHLPGTKGSSGSLRS-CLQPPGG 103


>BC100967-1|AAI00968.1|  193|Homo sapiens chromosome 17 open reading
           frame 65 protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +3

Query: 132 CRQPPGGPSAVCLXPDHXPGSYCXTIGPRPWSTADCVSPKPG 257
           C QPPG            PG  C  +GPRP  T      +PG
Sbjct: 80  CAQPPGHQLQPPGAGAPQPGVACSYLGPRPQRTPCSAQSRPG 121


>D84239-1|BAA19526.1| 5405|Homo sapiens IgG Fc binding protein
            protein.
          Length = 5405

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +3

Query: 114  GLVRRXCRQPPGGPSAVCLXPDHXPGSYCXTI-----GPRPWSTADC 239
            G   + CR  PGG S VC       G  C  +     G +P STA+C
Sbjct: 2026 GTCSQWCRCGPGGGSLVCTPASCGLGEVCGLLPSGQHGCQPVSTAEC 2072



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +3

Query: 114  GLVRRXCRQPPGGPSAVCLXPDHXPGSYCXTI-----GPRPWSTADC 239
            G   + CR  PGG S VC       G  C  +     G +P STA+C
Sbjct: 3227 GTCSQWCRCGPGGGSLVCTPASCGLGEVCGLLPSGQHGCQPVSTAEC 3273


>AY236486-1|AAP74806.1|  245|Homo sapiens proliferation-inducing
           gene 5 protein.
          Length = 245

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = +3

Query: 114 GLVRRXCRQPPGGPSAVCLXPDHXPGSYCXTIGPRPWSTADCVSPKPGSR 263
           GL  R    P  GPS  C   D  P      +   P     CV P P  R
Sbjct: 177 GLPARHAHLPVQGPSGPCTVADADPAVPVRQLPTTPAGKQFCVHPHPAGR 226


>AC007842-1|AAD39266.1| 2843|Homo sapiens Human Fc gamma BP [AA
            1-2843] protein.
          Length = 2843

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +3

Query: 114  GLVRRXCRQPPGGPSAVCLXPDHXPGSYCXTI-----GPRPWSTADC 239
            G   + CR  PGG S VC       G  C  +     G +P STA+C
Sbjct: 2026 GTCSQWCRCGPGGGSLVCTPASCGLGEVCGLLPSGQHGCQPVSTAEC 2072


>X01781-1|CAA25916.1|   32|Homo sapiens protein ( Human superoxide
           dismutase (SOD-1) gene exon 2. ).
          Length = 32

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGD 76
           G I GL+ G HG H +E GD
Sbjct: 10  GSIKGLTEGLHGFHVHEFGD 29


>BC009448-1|AAH09448.2|  193|Homo sapiens chromosome 17 open reading
           frame 65 protein.
          Length = 193

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 132 CRQPPGGPSAVCLXPDHXPGSYCXTIGPRPWSTADCVSPKPG 257
           C +PPG            PG  C  +GPRP  T      +PG
Sbjct: 80  CARPPGHQLQPPGAGAPQPGVACSYLGPRPQRTPRSAQSRPG 121


>BC100965-1|AAI00966.1|  193|Homo sapiens chromosome 17 open reading
           frame 65 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 132 CRQPPGGPSAVCLXPDHXPGSYCXTIGPRPWSTADCVSPKPG 257
           C +PPG            PG  C  +GPRP  T      +PG
Sbjct: 80  CARPPGHQLQPPGAGAPQPGVACSYLGPRPQRTPCSAQSRPG 121


>BC100964-1|AAI00965.2|  193|Homo sapiens chromosome 17 open reading
           frame 65 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 132 CRQPPGGPSAVCLXPDHXPGSYCXTIGPRPWSTADCVSPKPG 257
           C +PPG            PG  C  +GPRP  T      +PG
Sbjct: 80  CARPPGHQLQPPGAGAPQPGVACSYLGPRPQRTPCSAQSRPG 121


>L46374-1|AAB59626.1|   32|Homo sapiens superoxide dismutase
           protein.
          Length = 32

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGD 76
           G I GL+ G HG H  E GD
Sbjct: 10  GSIKGLTEGLHGFHVQEFGD 29


>BC069017-1|AAH69017.1|  364|Homo sapiens rhomboid domain containing
           2 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 80  PXSYXWSPCLPGLSPSMXPSATRRALGRLSAX*P 181
           P SY    C P LSPS   S T+ A G+  A  P
Sbjct: 251 PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWP 284


>BC033066-1|AAH33066.1|  539|Homo sapiens F-box and leucine-rich
           repeat protein 6 protein.
          Length = 539

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +3

Query: 102 RASRGLVRRXCRQPPGGPSA 161
           RA R   RR  RQPP GPSA
Sbjct: 58  RAQRRASRRTPRQPPRGPSA 77


>BC006234-1|AAH06234.2|  233|Homo sapiens RHBDD2 protein protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 80  PXSYXWSPCLPGLSPSMXPSATRRALGRLSAX*P 181
           P SY    C P LSPS   S T+ A G+  A  P
Sbjct: 120 PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWP 153


>AL031847-3|CAI19439.1|  180|Homo sapiens hairy and enhancer of
           split 3 (Drosophila) protein.
          Length = 180

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 144 PGGPSAVCLXPDHXPGSYCXTIGPRPWSTADCVSPKPGSRLVLP 275
           P  P  + L P+  PGS      P+P S+    SP  G R+  P
Sbjct: 134 PRSPPPLLLLPESLPGSSASVPPPQPASSRCAESPGLGLRVWRP 177


>AK223088-1|BAD96808.1|  533|Homo sapiens F-box and leucine-rich
           repeat protein 6 isoform 2 variant protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +3

Query: 102 RASRGLVRRXCRQPPGGPSA 161
           RA R   RR  RQPP GPSA
Sbjct: 58  RAQRRASRRTPRQPPRGPSA 77


>AK123170-1|BAC85547.1|  330|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41175 fis, clone BRACE2042550, highly  similar
           to Bos taurus mRNA for SCO-spondin. ).
          Length = 330

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 95  WSPCLPGLSPSMXPSATRRAL 157
           WSPC P L PS    A+R AL
Sbjct: 194 WSPCGPCLPPSALAPASRTAL 214


>AK026590-1|BAB15503.1|  223|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22937 fis, clone KAT07960. ).
          Length = 223

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 80  PXSYXWSPCLPGLSPSMXPSATRRALGRLSAX*P 181
           P SY    C P LSPS   S T+ A G+  A  P
Sbjct: 110 PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWP 143


>AK026541-1|BAB15499.1|  533|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22888 fis, clone KAT03934. ).
          Length = 533

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +3

Query: 102 RASRGLVRRXCRQPPGGPSA 161
           RA R   RR  RQPP GPSA
Sbjct: 58  RAQRRASRRTPRQPPRGPSA 77


>AC005067-2|AAD45960.1|  364|Homo sapiens WUGSC:H_RG122E10.2b
           protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 80  PXSYXWSPCLPGLSPSMXPSATRRALGRLSAX*P 181
           P SY    C P LSPS   S T+ A G+  A  P
Sbjct: 251 PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWP 284


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,740,736
Number of Sequences: 237096
Number of extensions: 1042767
Number of successful extensions: 2816
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2816
length of database: 76,859,062
effective HSP length: 71
effective length of database: 60,025,246
effective search space used: 1380580658
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -