Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0768.Seq
         (284 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide...    40   3e-04
X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc sup...    39   7e-04
L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide dism...    39   7e-04
AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxi...    39   7e-04
AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxi...    39   7e-04
Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical pr...    38   9e-04
AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide di...    38   9e-04
AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.     38   9e-04
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    26   3.8  
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    26   3.8  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical pr...    25   6.6  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    25   6.6  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    25   6.6  
U21733-1|AAB38384.1|  869|Caenorhabditis elegans UNC-44 protein.       25   6.6  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    25   6.6  
Z50070-7|CAA90396.1|   87|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide
           dismutase) protein5 protein.
          Length = 178

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 138 DGXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           +G I GLSPG HG H ++ GD + GC S
Sbjct: 52  EGEIKGLSPGLHGFHIHQYGDSTDGCTS 79


>X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc
           superoxide dismutase protein.
          Length = 158

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 144 VADGXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           V +G I GL+PG HG H ++ GD + GC S
Sbjct: 30  VIEGEIKGLTPGLHGFHVHQYGDSTNGCIS 59


>L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 158

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 144 VADGXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           V +G I GL+PG HG H ++ GD + GC S
Sbjct: 30  VIEGEIKGLTPGLHGFHVHQYGDSTNGCIS 59


>AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform b protein.
          Length = 158

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 144 VADGXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           V +G I GL+PG HG H ++ GD + GC S
Sbjct: 30  VIEGEIKGLTPGLHGFHVHQYGDSTNGCIS 59


>AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform a protein.
          Length = 180

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 144 VADGXIDGLSPGRHGLHXYEXGDLSQGCNS 55
           V +G I GL+PG HG H ++ GD + GC S
Sbjct: 52  VIEGEIKGLTPGLHGFHVHQYGDSTNGCIS 81


>Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical
           protein F55H2.1 protein.
          Length = 176

 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 147 LVADGXIDGLSPGRHGLHXYEXGDLSQGCNSXRG 46
           L  +G + GL+ G+HG H +E GD   GC S  G
Sbjct: 53  LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGG 86


>AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 221

 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 147 LVADGXIDGLSPGRHGLHXYEXGDLSQGCNSXRG 46
           L  +G + GL+ G+HG H +E GD   GC S  G
Sbjct: 53  LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGG 86


>AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.
          Length = 176

 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 147 LVADGXIDGLSPGRHGLHXYEXGDLSQGCNSXRG 46
           L  +G + GL+ G+HG H +E GD   GC S  G
Sbjct: 53  LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGG 86


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCN 58
           G +  L  GRH +  ++ GD S+GC+
Sbjct: 913 GEVYTLPVGRHAVVLHQFGDSSEGCS 938


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCN 58
           G +  L  GRH +  ++ GD S+GC+
Sbjct: 704 GEVYTLPVGRHAVVLHQFGDSSEGCS 729


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 120 VRRXCRQPPGGPSAVCLXPDHXPGSYCXTI 209
           V++ C +PP G   VC+     P   C T+
Sbjct: 290 VQKNCTEPPCGFQGVCVNTTEVPVGGCATM 319


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 120 VRRXCRQPPGGPSAVCLXPDHXPGSYCXTI 209
           V++ C +PP G   VC+     P   C T+
Sbjct: 355 VQKNCTEPPCGFQGVCVNTTEVPVGGCATM 384


>Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical
           protein C04C11.2 protein.
          Length = 584

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 124 VDXAVSHQAGPRPSVCXLTTXQDLIAXRLVRDHGRRPIVFPQNLDHG 264
           ++  V HQ    P     T   + I   +V ++G   IV  + ++HG
Sbjct: 501 IEELVEHQLHHSPEHSPATPTVEPIVETIVNENGEETIVSTEVIEHG 547


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +3

Query: 144  PGGPSAVCLXPDHXPGSYCXTIGPRPWSTADCVSPKPGSRLV 269
            P  PS + L P H PG     I P P   +D    K G   V
Sbjct: 6407 PISPSGILLPPKHDPG---RPISPVPPRKSDGTMQKEGDHFV 6445


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +3

Query: 144  PGGPSAVCLXPDHXPGSYCXTIGPRPWSTADCVSPKPGSRLV 269
            P  PS + L P H PG     I P P   +D    K G   V
Sbjct: 6407 PISPSGILLPPKHDPG---RPISPVPPRKSDGTMQKEGDHFV 6445


>U21733-1|AAB38384.1|  869|Caenorhabditis elegans UNC-44 protein.
          Length = 869

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +3

Query: 144 PGGPSAVCLXPDHXPGSYCXTIGPRPWSTADCVSPKPGSRLV 269
           P  PS + L P H PG     I P P   +D    K G   V
Sbjct: 282 PISPSGILLPPKHDPG---RPISPVPPRKSDGTMQKEGDHFV 320


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 141 PPGGPSAVCLXPDHXPGSYCXTIGPRPWSTADCVSPKPGS 260
           P GGP      P   PG+Y    GP P       +P PG+
Sbjct: 426 PQGGPGGFGPPPPGGPGAY----GPPPTGFPPVGAPPPGA 461


>Z50070-7|CAA90396.1|   87|Caenorhabditis elegans Hypothetical
           protein F43G6.7 protein.
          Length = 87

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 207 IGPRPWSTADCVSPKPGSRLVLPVNG 284
           IGP PW + +   P PG +   PV G
Sbjct: 12  IGPGPWPSLESQPPAPGDQ---PVQG 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,511,575
Number of Sequences: 27780
Number of extensions: 128576
Number of successful extensions: 228
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)