Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0768.Seq
         (284 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   6.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    19   9.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   9.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    19   9.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   9.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   9.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 102 RASRGLVRRXCRQPPGGP 155
           RA +   +  C QPP  P
Sbjct: 304 RAEKDPKKMPCTQPPSAP 321


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = +2

Query: 215 ETMVDGRLCFPKTWITAGTP 274
           E   D +   P+ W T  TP
Sbjct: 431 ENFKDAKKYLPERWTTPTTP 450


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 187 GXWSGCRQ 164
           G WSGC Q
Sbjct: 290 GHWSGCLQ 297


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 222 WSTADCVSP 248
           W+T +CV+P
Sbjct: 105 WNTKNCVNP 113


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 187 GXWSGCRQ 164
           G WSGC Q
Sbjct: 258 GHWSGCLQ 265


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 97  EPVPPGA*SVDXAVSHQAGP 156
           +P PP A  V   ++H   P
Sbjct: 297 QPTPPSATLVGTTITHLRDP 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,736
Number of Sequences: 438
Number of extensions: 1699
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)