Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0768.Seq
(284 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z... 38 0.001
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla... 36 0.003
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ... 36 0.004
At3g04820.1 68416.m00522 expressed protein contains PFam profile... 28 0.87
At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /... 28 1.2
At1g26850.3 68414.m03275 dehydration-responsive family protein s... 27 1.5
At1g26850.2 68414.m03274 dehydration-responsive family protein s... 27 1.5
At1g26850.1 68414.m03273 dehydration-responsive family protein s... 27 1.5
At4g01890.1 68417.m00247 glycoside hydrolase family 28 protein /... 27 2.0
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ... 26 3.5
At5g54440.1 68418.m06780 expressed protein 25 6.1
At5g59050.2 68418.m07399 expressed protein 25 8.1
At5g59050.1 68418.m07398 expressed protein 25 8.1
At1g44820.1 68414.m05134 aminoacylase, putative / N-acyl-L-amino... 25 8.1
>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
superoxide dismutase (CSD3) identical to copper/zinc
superoxide dismutase GI:3273755
Length = 164
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3
Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
G I GLSPG HG H + GD + GC S
Sbjct: 38 GKISGLSPGFHGFHIHSFGDTTNGCIS 64
>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
(SODCP) / copper/zinc superoxide dismutase (CSD2)
identical to GP:3273753:AF061519
Length = 216
Score = 36.3 bits (80), Expect = 0.003
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 129 IDGLSPGRHGLHXYEXGDLSQGCNS 55
I GL+PG HG H +E GD + GC S
Sbjct: 97 ITGLTPGPHGFHLHEFGDTTNGCIS 121
>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
copper/zinc superoxide dismutase (CSD1) identical to
SWISS-PROT: P24704
Length = 152
Score = 35.9 bits (79), Expect = 0.004
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 135 GXIDGLSPGRHGLHXYEXGDLSQGCNS 55
G + GL PG HG H + GD + GC S
Sbjct: 32 GTVSGLKPGLHGFHVHALGDTTNGCMS 58
>At3g04820.1 68416.m00522 expressed protein contains PFam profile
PF01142: Uncharacterized protein family UPF0024;
expression supported by MPSS
Length = 747
Score = 28.3 bits (60), Expect = 0.87
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 222 WSTADCVSPKPGSRLVLPVN 281
+ST+D V P PGSR++ P N
Sbjct: 552 YSTSDIVLPLPGSRVIYPSN 571
>At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
(Glycine max); contains PF00295: Glycosyl hydrolases
family 28 (polygalacturonases)
Length = 491
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -1
Query: 248 WGNTIGRRPWS---RTNRXAIRSWXVVRXQTDGRGPAWW 141
W + I +R W R N A++ V+ DGRG WW
Sbjct: 166 WPSNISKRQWLVFYRVNGMALKGEGVI----DGRGQKWW 200
>At1g26850.3 68414.m03275 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 506
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 276 RGVPAVIQVLGKHNRP-STMVSDQSXCNKIL 187
RGVPAVI VLG P T D + C++ L
Sbjct: 251 RGVPAVIGVLGTIKLPYPTRAFDMAHCSRCL 281
>At1g26850.2 68414.m03274 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 616
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 276 RGVPAVIQVLGKHNRP-STMVSDQSXCNKIL 187
RGVPAVI VLG P T D + C++ L
Sbjct: 251 RGVPAVIGVLGTIKLPYPTRAFDMAHCSRCL 281
>At1g26850.1 68414.m03273 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 616
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 276 RGVPAVIQVLGKHNRP-STMVSDQSXCNKIL 187
RGVPAVI VLG P T D + C++ L
Sbjct: 251 RGVPAVIGVLGTIKLPYPTRAFDMAHCSRCL 281
>At4g01890.1 68417.m00247 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:7381227;
contains PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 468
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = -1
Query: 281 VDGEYQP*S--RFWGNTIGRRPWS---RTNRXAIRSWXVVRXQTDGRGPAWW 141
VDG P + W +++ +R W R N A++ V+ DGRG WW
Sbjct: 130 VDGTIVPRDGPKSWPSSLNKRQWLAFYRINGMALQGAGVI----DGRGQNWW 177
>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
putative similar to copper chaperone for superoxide
dismutase [Homo sapiens] gi|2431868|gb|AAC51764
Length = 254
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 123 GLSPGRHGLHXYEXGDLSQGCNS 55
GLSPG H E GDL+ G S
Sbjct: 129 GLSPGTHSWCINEYGDLTNGAAS 151
>At5g54440.1 68418.m06780 expressed protein
Length = 829
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 144 PGGPSAVCLXPDHXPGSYCXTI 209
P GP VC+ P SYC +
Sbjct: 807 PSGPHLVCVLPPLLSSSYCLPV 828
>At5g59050.2 68418.m07399 expressed protein
Length = 193
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 77 SPXSYXWSPCLPGLSPSMXPS 139
SP S WSP GLS + PS
Sbjct: 84 SPQSTLWSPFASGLSSPIGPS 104
>At5g59050.1 68418.m07398 expressed protein
Length = 312
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 77 SPXSYXWSPCLPGLSPSMXPS 139
SP S WSP GLS + PS
Sbjct: 84 SPQSTLWSPFASGLSSPIGPS 104
>At1g44820.1 68414.m05134 aminoacylase, putative /
N-acyl-L-amino-acid amidohydrolase, putative similar to
aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase
ACY-1)[Homo sapiens] SWISS-PROT:Q03154
Length = 438
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 211 VRDHGRRPIVFPQNLDHGWYS 273
+RDH RPI+ P N + W+S
Sbjct: 333 LRDHLGRPIMTPVNDSNPWWS 353
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,348,458
Number of Sequences: 28952
Number of extensions: 119976
Number of successful extensions: 258
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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