Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0766.Seq
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 73 2e-14
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 69 3e-13
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.19
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.19
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 1.8
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 26 2.3
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 25 5.4
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 7.1
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 9.4
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 72.9 bits (171), Expect = 2e-14
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +1
Query: 61 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYR 240
RRL+YNT+SN+ RI++TPG + Y ++KK IPRCG L+GI RP E +RL +
Sbjct: 9 RRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREFARLSHN 68
Query: 241 KKTVK 255
KKTV+
Sbjct: 69 KKTVQ 73
Score = 43.2 bits (97), Expect = 2e-05
Identities = 21/27 (77%), Positives = 21/27 (77%)
Frame = +2
Query: 260 YGGVLCHKCVKQRIVRAFLIEEQKIVK 340
YGG L VK RIVRAFLIEEQKIVK
Sbjct: 76 YGGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 68.9 bits (161), Expect = 3e-13
Identities = 31/65 (47%), Positives = 44/65 (67%)
Frame = +1
Query: 61 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYR 240
RRL+YNT+SN+ RI++TPG + Y ++KK IPRCG L+GI RP E +RL +
Sbjct: 9 RRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREFARLSHN 68
Query: 241 KKTVK 255
+K V+
Sbjct: 69 QKKVQ 73
Score = 43.2 bits (97), Expect = 2e-05
Identities = 21/27 (77%), Positives = 21/27 (77%)
Frame = +2
Query: 260 YGGVLCHKCVKQRIVRAFLIEEQKIVK 340
YGG L VK RIVRAFLIEEQKIVK
Sbjct: 76 YGGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.9 bits (64), Expect = 0.19
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 203 QLDLLNVPVFATVRKQ*SVYGGVLCHKCVKQRIVRAFLIEEQKIVK 340
Q+DLL++P F T Y V C + QR + L E QK+V+
Sbjct: 632 QIDLLSIPSFQTAGS--IAYAHVFCFITLGQRNLYDVLYETQKVVR 675
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 29.9 bits (64), Expect = 0.19
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 203 QLDLLNVPVFATVRKQ*SVYGGVLCHKCVKQRIVRAFLIEEQKIVK 340
Q+DLL++P F T Y V C + QR + L E QK+V+
Sbjct: 632 QIDLLSIPSFQTAGS--IAYAHVFCFITLGQRNLYDVLYETQKVVR 675
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 307 SDNALLDTFMAEDTTIN 257
SDNA +DT ++ED TIN
Sbjct: 83 SDNAAIDTDISEDETIN 99
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 408 LSPKIHFVAFFADLVLACCALRTFTIFCSS 319
L IH A + L+CC T I+CSS
Sbjct: 9 LCKAIHLKAIIEEPKLSCCHCETCRIWCSS 38
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 70 SYNTKSN-QRRIVRTPGGRLVY 132
SY T + +RIV+ PGGR +Y
Sbjct: 165 SYATSARGSKRIVQVPGGRRIY 186
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 61 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 165
R + N KS+++R PG L + KPK R
Sbjct: 245 REQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +1
Query: 163 RCGQCKSKLRGIQPARPAERSR 228
RC +CK +G RP R R
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCR 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,479
Number of Sequences: 5004
Number of extensions: 34420
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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