Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0766.Seq
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 73 1e-13
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 73 1e-13
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 72 2e-13
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 29 2.3
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118... 28 4.0
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 4.0
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 27 5.3
01_05_0589 + 23459847-23460344,23460493-23461296 27 5.3
08_02_1022 + 23707993-23708528,23708620-23708706,23708807-237088... 27 7.0
02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225 27 7.0
09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112... 27 9.2
07_01_0314 - 2219664-2221091 27 9.2
06_01_0278 - 2042574-2042612,2042738-2043055,2043150-2043296,204... 27 9.2
04_04_1557 + 34411215-34411571,34411676-34411831 27 9.2
02_05_1325 - 35708046-35708207,35708297-35708374,35708466-357085... 27 9.2
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 72.9 bits (171), Expect = 1e-13
Identities = 37/66 (56%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = +1
Query: 61 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE--RSRLC 234
+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI RPAE RSRL
Sbjct: 9 KRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAEYKRSRLS 68
Query: 235 YRKKTV 252
++TV
Sbjct: 69 RNRRTV 74
Score = 43.6 bits (98), Expect = 7e-05
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +2
Query: 260 YGGVLCHKCVKQRIVRAFLIEEQKIVK 340
YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 78 YGGVLSGTAVRERIIRAFLVEEQKIVK 104
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 72.9 bits (171), Expect = 1e-13
Identities = 37/66 (56%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = +1
Query: 61 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE--RSRLC 234
+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI RPAE RSRL
Sbjct: 9 KRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAEYKRSRLS 68
Query: 235 YRKKTV 252
++TV
Sbjct: 69 RNRRTV 74
Score = 43.6 bits (98), Expect = 7e-05
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +2
Query: 260 YGGVLCHKCVKQRIVRAFLIEEQKIVK 340
YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 78 YGGVLSGTAVRERIIRAFLVEEQKIVK 104
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 71.7 bits (168), Expect = 2e-13
Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = +1
Query: 61 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE--RSRLC 234
+R SY TKSNQ R+V+TPGG+LVYQY KK P+C K++GI RPAE RSRL
Sbjct: 9 KRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAEYKRSRLS 68
Query: 235 YRKKTV 252
++TV
Sbjct: 69 RNRRTV 74
Score = 43.6 bits (98), Expect = 7e-05
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +2
Query: 260 YGGVLCHKCVKQRIVRAFLIEEQKIVK 340
YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 78 YGGVLSGTAVRERIIRAFLVEEQKIVK 104
>03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 70 SYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERS 225
S N NQ+R+V+ G + +KP+++ + KL+G RP R+
Sbjct: 1123 SNNQSQNQQRLVQVGGKQGAA--TQKPQRLSNARPAREKLKGDNAKRPGSRT 1172
>07_03_1689 +
28710936-28711129,28711283-28711341,28711858-28711892,
28712123-28712226,28712325-28712397,28712495-28712553,
28712656-28712721,28712815-28712898,28712995-28713059,
28713152-28713342,28713522-28713612,28714076-28714134,
28714732-28714872,28715214-28715321
Length = 442
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 33 YECCFVMAISTTVVQHKIKSKKNSKDTGWPLGLSVCKKAQEDPKVWSVQEQTPW 194
Y+ C+ + I ++ NS TG + S+C+ Q+DP +W+ + W
Sbjct: 162 YDNCYNLGIKPKDRYPPMRDALNS--TGRQIFYSLCEWGQDDPALWAGKVGNSW 213
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 196 IQPARPAERSRLCYRKKTVKCLW 264
+ PARP RSRL R+ + C W
Sbjct: 98 LSPARPHRRSRLRLREPSRSCCW 120
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 130 YQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKC 258
+ Y IPRC QC L G +P SR C RK+ ++C
Sbjct: 1776 FGYCDATAAIPRC-QC---LDGFEPDGSNSSSRGCRRKQQLRC 1814
>01_05_0589 + 23459847-23460344,23460493-23461296
Length = 433
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 230 RRERSAGLAGWIPRSLLLH*PHLGIFL 150
R +R + GW P+ L+L+ P +G+F+
Sbjct: 286 RGDRGRTIRGWAPQVLVLNHPAVGVFV 312
>08_02_1022 +
23707993-23708528,23708620-23708706,23708807-23708863,
23708955-23709261,23709545-23709631,23709720-23709767
Length = 373
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 225 GTFSRSSWLDTTEFALALTTPWDLLGLFYILINQAA 118
G + + SWL FA+ALT + L+ +LI Q A
Sbjct: 22 GVYLQRSWLVLLMFAVALTPTYVLMEDLLLLIGQPA 57
>02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225
Length = 489
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 233 QRRERSAGLAGWIPRSLLLH*PHLGIFL 150
+ +ER LA W P+ L+L P +G+FL
Sbjct: 354 ETKERGV-LASWCPQELVLSHPSVGLFL 380
>09_03_0130 -
12609417-12610462,12610786-12611040,12611139-12611253,
12611376-12611428,12611854-12612114,12612252-12612302,
12612412-12612660,12612779-12613007,12613292-12613666
Length = 877
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 267 PP*TLHCFLTVAKTGTFSRSSWLDTTEFALALTTPWDLLG 148
PP L LT ++G S W+D +E + + PW L G
Sbjct: 24 PPPPLRRLLTATRSGG---SRWVDGSEVGSSESAPWSLDG 60
>07_01_0314 - 2219664-2221091
Length = 475
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = -2
Query: 183 ALALTTPWDLLGLFYILINQAATRCPYYSSLI*FCVVRQSSILPLRNNIHRQQYNIYGQ 7
AL W+LL A TR SSL+ CV R + P R + R N G+
Sbjct: 257 ALKERARWELLAAGDAAGAAAVTRFQALSSLLWRCVTRARRLAPGREVVFRASVNSRGR 315
>06_01_0278 -
2042574-2042612,2042738-2043055,2043150-2043296,
2043382-2044221,2045182-2045282,2045666-2045791,
2047124-2047214
Length = 553
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Frame = -1
Query: 202 AGYHGVCSCTDHTLGSSWAFLHTDKPSGHPV----SLLFFFDLILCCTTVVD 59
A Y+ CS + G S +LH S HP L L LCC + +
Sbjct: 223 AKYNFPCSLLSNGSGDSIQYLHLSNCSFHPTVTLSGLRSLMRLYLCCVRITE 274
>04_04_1557 + 34411215-34411571,34411676-34411831
Length = 170
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 148 PKKIPRCGQCKSKLRGIQPARPAERSRLCYR 240
P +I RC + ++ ++P RP++ SRLC R
Sbjct: 138 PNRISRCLEEGAEDFLLKPVRPSDVSRLCSR 168
>02_05_1325 -
35708046-35708207,35708297-35708374,35708466-35708512,
35708731-35708839
Length = 131
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 148 PKKIPRCGQCKSKLRGIQPARPAERSRLCYR 240
P +I RC + ++ I+P RP++ SRLC R
Sbjct: 97 PTRIRRCLEEGAEDFLIKPVRPSDVSRLCNR 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,863,179
Number of Sequences: 37544
Number of extensions: 226636
Number of successful extensions: 587
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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