Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0766.Seq
(451 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07) 46 1e-05
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06) 30 1.0
SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033) 29 1.8
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58) 29 2.3
SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_803| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_22632| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15) 27 7.2
SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5) 27 9.5
>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
Length = 58
Score = 46.0 bits (104), Expect = 1e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +2
Query: 260 YGGVLCHKCVKQRIVRAFLIEEQKIV 337
YGG C CVK+RI+RAFLIEEQKIV
Sbjct: 20 YGGSRCAACVKERIIRAFLIEEQKIV 45
>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 30.7 bits (66), Expect = 0.58
Identities = 23/79 (29%), Positives = 31/79 (39%)
Frame = +1
Query: 166 CGQCKSKLRGIQPARPAERSRLCYRKKTVKCLWWCPLP*MCQATHCQSLPH*RTKNCEGP 345
CG+C I S R+ VKC +CQ HC LP R K+C+ P
Sbjct: 81 CGKCDVTCERIVGVAKINNSLFVCRQVVVKCENG-----VCQDDHCACLPCWRGKSCDQP 135
Query: 346 QGTTGEH*VGKEGYKVNFR 402
TG ++ Y+ R
Sbjct: 136 D-LTGPPEFEQKEYEAEIR 153
>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
Length = 299
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 72 VQHKIKSKKNSKDTGWPLGLSV 137
VQH K+KK + DT +P+G++V
Sbjct: 51 VQHSCKNKKETIDTDYPIGMAV 72
>SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)
Length = 551
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 22 VLLSMNVVS*W-QYRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCK-SKLRG 195
+L+S + + W QY + Y+ + RIV G + YQY+ P I C C S L G
Sbjct: 346 LLVSYGINTYWYQYLLVLYSISTYWYRIVSVLTGIVWYQYLLVPYGISTCWYCMVSVLTG 405
Query: 196 I 198
I
Sbjct: 406 I 406
>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 61 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 150
RR++ T SN R++RTP G+ ++ VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187
>SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 115 PVSLLFFFDLILCCTTVVDIAITKQHS 35
P+SL F D++LCC + I+I+K +
Sbjct: 471 PISLQTFKDILLCCQDLKKISISKMEN 497
>SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 42
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 142 LHTDKPSGHPVSLLFFFDLI-LCCTTVVD 59
LHT +P+GHP ++ FD I + T+VD
Sbjct: 5 LHTTEPTGHPCHIVCCFDAIRMIPDTLVD 33
>SB_803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +1
Query: 214 AERSRLCYRKKTVKC-LWWCPLP*M--CQATHCQSLPH 318
A+ +C K + LWW L M C+A H SLPH
Sbjct: 214 ADHPGMCRMKSLARSYLWWPKLENMHNCEACHGSSLPH 251
>SB_22632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 27.9 bits (59), Expect = 4.1
Identities = 25/85 (29%), Positives = 33/85 (38%)
Frame = -2
Query: 384 AFFADLVLACCALRTFTIFCSSMRKALTMRCLTHLWQRTPP*TLHCFLTVAKTGTFSRSS 205
AF L L C L T SS +L + L+ PP T F + + T +
Sbjct: 281 AFLTGLSLVCLVLYFVT---SSDSGSLVIDSLSANGHPDPPVTQRIFWALTEGATATALL 337
Query: 204 WLDTTEFALALTTPWDLLGLFYILI 130
W + E AL GLFY +I
Sbjct: 338 WAEGKEALNALQAASVCSGLFYTVI 362
>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
Length = 857
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 259 LWWCPLP*MCQATHCQSLPH*RTKNCEGPQGTT 357
LW P+P Q + C+S P T E P TT
Sbjct: 229 LWRKPVPKTDQQSECESSPGANTDRLESPARTT 261
>SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)
Length = 634
Score = 26.6 bits (56), Expect = 9.5
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 52 WQYRRLSYN-TKSNQRRIVRTPGGRLVYQYVKKPKKIPR---CGQCKSKLRG 195
W+ RR+ N TKS R G + YQ IPR CG C+SKL G
Sbjct: 255 WRCRRVPANETKS---RTTSCMGQTMAYQRGYVLTAIPRLTMCGVCRSKLIG 303
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,075
Number of Sequences: 59808
Number of extensions: 272424
Number of successful extensions: 754
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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