Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0766.Seq
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...    76   1e-14
AF040648-2|AAL06033.1|  101|Caenorhabditis elegans Hypothetical ...    28   2.7  
AF040648-1|AAK21412.1|  519|Caenorhabditis elegans Hypothetical ...    28   2.7  
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z81118-8|CAB03326.3|  297|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 36/64 (56%), Positives = 45/64 (70%)
 Frame = +1

Query: 61  RRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYR 240
           RRLSYNT SN++R+V+TPGGRLV QY+KK  +IP+C     KL GI PARP     L   
Sbjct: 9   RRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPIALRLLKRN 68

Query: 241 KKTV 252
           ++TV
Sbjct: 69  ERTV 72



 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +2

Query: 260 YGGVLCHKCVKQRIVRAFLIEEQKIV 337
           YGG L    VK+RI RAFL+EEQKIV
Sbjct: 76  YGGCLSPNAVKERITRAFLVEEQKIV 101


>AF040648-2|AAL06033.1|  101|Caenorhabditis elegans Hypothetical
           protein H19M22.3b protein.
          Length = 101

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 127 PSGHPVSLLFFFDLILCCTTVVDIAITKQHS*TTIQ 20
           P+G+P+S ++   LIL   T+   A T QHS TT Q
Sbjct: 6   PNGNPLSTIY---LILSLFTLAHTAPTTQHSRTTTQ 38


>AF040648-1|AAK21412.1|  519|Caenorhabditis elegans Hypothetical
           protein H19M22.3a protein.
          Length = 519

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 127 PSGHPVSLLFFFDLILCCTTVVDIAITKQHS*TTIQ 20
           P+G+P+S ++   LIL   T+   A T QHS TT Q
Sbjct: 6   PNGNPLSTIY---LILSLFTLAHTAPTTQHSRTTTQ 38


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
           protein Y53C10A.9 protein.
          Length = 1564

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 37  NVVS*WQYRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPA 207
           NV + W Y  + ++  +N   + + P  +L  + V+  KKI    + K K   + PA
Sbjct: 88  NVENYWNYSPMRWDNTTNSLDLAKNPARKLFIKDVRACKKIVYIVEDKYKTTMVLPA 144


>Z81118-8|CAB03326.3|  297|Caenorhabditis elegans Hypothetical
           protein T10G3.3 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 259 NTSLFSYGSKDGNVQQV*LAGYHGVCSCTDHTLGSSWAF 143
           NT       KDG V+           SC DH++G +W F
Sbjct: 71  NTKYECLKEKDGTVEIRRTLNIKRKKSCGDHSIGDTWVF 109


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 211 PAERSRLCYRKKTVKCLWWCPLP*MCQATHCQSLPH*RTKNCEGPQG 351
           P E S+ CY     +   WC     C ++ C      RT+ C GP G
Sbjct: 639 PNEESQFCYGPPCAEWTEWCEWS-GC-SSKCGPGQRTRTRGCLGPNG 683


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,460,963
Number of Sequences: 27780
Number of extensions: 201453
Number of successful extensions: 502
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)