Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0766.Seq
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.50 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   2.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   2.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   3.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   3.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   3.6  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   8.2  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   8.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 100 IVRTPGGRLVYQYVKKPKKI 159
           + +  G RLVYQ+V  PK I
Sbjct: 527 LAKVDGQRLVYQFVDVPKDI 546


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 417 YLNLSPKIHFVAFFAD 370
           Y  + P IHF   FAD
Sbjct: 454 YFFICPSIHFAQLFAD 469


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 417 YLNLSPKIHFVAFFAD 370
           Y  + P IHF   FAD
Sbjct: 454 YFFICPSIHFAQLFAD 469


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 174 LTTPWDLLGLFYILI 130
           +TTPWD   +++ L+
Sbjct: 168 ITTPWDYYYIYHTLV 182


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 174 LTTPWDLLGLFYILI 130
           +TTPWD   +++ L+
Sbjct: 183 ITTPWDYYYIYHTLV 197


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 174 LTTPWDLLGLFYILI 130
           +TTPWD   +++ L+
Sbjct: 71  ITTPWDYYYIYHTLV 85


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 287 VKQRIVRAFLIEEQKIVKV 343
           + + I+R FLI +QK  K+
Sbjct: 73  ITRYIIRMFLISQQKTSKL 91


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 287 VKQRIVRAFLIEEQKIVKV 343
           + + I+R FLI +QK  K+
Sbjct: 56  ITRYIIRMFLISQQKTSKL 74


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 287 HIYGRGHHHKHFT 249
           H  G GH H H T
Sbjct: 417 HTMGHGHSHIHAT 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,029
Number of Sequences: 438
Number of extensions: 2622
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)