Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0766.Seq
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A) iden...    66   1e-11
At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) simi...    64   4e-11
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi...    64   6e-11
At4g34060.1 68417.m04833 expressed protein similar to DEMETER pr...    36   0.010
At1g28320.1 68414.m03475 protease-related similar to Protease de...    29   1.5  
At3g56240.1 68416.m06250 copper homeostasis factor / copper chap...    28   3.4  
At5g37040.1 68418.m04442 F-box family protein contains Pfam prof...    27   4.4  
At1g77300.1 68414.m09002 SET domain-containing protein similar t...    27   4.4  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   5.9  
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera...    27   5.9  
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-...    27   7.7  
At5g07110.1 68418.m00810 prenylated rab acceptor (PRA1) family p...    27   7.7  

>At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A)
           identical to GB:Q42351, location of EST 105E2T7,
           gb|T22624
          Length = 120

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
 Frame = +1

Query: 58  YR-RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE--RSR 228
           YR R SY TKSNQ RIV+TPGG+LVYQ  KK    P+C     +++GI   RP+E  RSR
Sbjct: 7   YRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSR 66

Query: 229 LCYRKKTV 252
           L   ++TV
Sbjct: 67  LSRNRRTV 74



 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +2

Query: 260 YGGVLCHKCVKQRIVRAFLIEEQKIVK 340
           YGGVL    V++RI+RAFL+EEQKIVK
Sbjct: 78  YGGVLSGSAVRERIIRAFLVEEQKIVK 104


>At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) similar
           to SP:Q42351 from [Arabidopsis thaliana]
          Length = 119

 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
 Frame = +1

Query: 58  YR-RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE--RSR 228
           YR R SY TKSNQ RIV+TPGG+L YQ  KK    P+C     +++GI   RP E  RSR
Sbjct: 7   YRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSR 66

Query: 229 LCYRKKTV 252
           L   ++TV
Sbjct: 67  LSRNRRTV 74



 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +2

Query: 260 YGGVLCHKCVKQRIVRAFLIEEQKIVK 340
           YGGVL    V++RI+RAFL+EEQKIVK
Sbjct: 78  YGGVLSGSAVRERIIRAFLVEEQKIVK 104


>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
           to 60S ribosomal protein L34 GB:P41098 [Nicotiana
           tabacum]
          Length = 120

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
 Frame = +1

Query: 58  YR-RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE--RSR 228
           YR R SY TKSNQ RIV+TPGG+L YQ   K    P+C     +++GI   RPAE  RSR
Sbjct: 7   YRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSR 66

Query: 229 LCYRKKTV 252
           L   ++TV
Sbjct: 67  LARNERTV 74



 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +2

Query: 260 YGGVLCHKCVKQRIVRAFLIEEQKIVK 340
           YGGVL    V++RIVRAFL+EEQKIVK
Sbjct: 78  YGGVLSGVAVRERIVRAFLVEEQKIVK 104


>At4g34060.1 68417.m04833 expressed protein similar to DEMETER
           protein [Arabidopsis thaliana] GI:21743571; expression
           supported by MPSS
          Length = 1073

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 3   NFDHRYCIVVYECCFVMAISTTVVQHKIKSKKNSKD 110
           NFD    ++ + CCFV+  S T   HK K KKNSK+
Sbjct: 30  NFDSYLSVIYHPCCFVINNSQTT--HKKKEKKNSKE 63


>At1g28320.1 68414.m03475 protease-related similar to Protease degS
           [Precursor] (SP:P44947) [Haemophilus influenzae];
           similar to DegP protease precursor (GI:2565436)
           [Arabidopsis thaliana]
          Length = 709

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 57  ISTTVVQHKIKSKKNSKDTGWPLGLSVCKKA 149
           +S+  +Q  I++   SKD+GW +G S+   A
Sbjct: 140 VSSAALQSLIEASSGSKDSGWDIGWSLVSAA 170


>At3g56240.1 68416.m06250 copper homeostasis factor / copper
           chaperone (CCH) (ATX1) identical to gi:3168840 Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 121

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 90  SKKNSKDTGWPLGLSVCKKAQEDPKVWSVQE 182
           SK   K + WP+      KA+ DPKV +V E
Sbjct: 58  SKTGKKTSYWPVEAEAEPKAEADPKVETVTE 88


>At5g37040.1 68418.m04442 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 242

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 273 RTPP*TLHCFLTVAKT-GTFSRSSWLDTTEFALA 175
           R PP +LHCF +V K     SR   L    FA A
Sbjct: 17  RVPPRSLHCFRSVCKEWNALSRDKRLINKNFACA 50


>At1g77300.1 68414.m09002 SET domain-containing protein similar to
            huntingtin interacting protein 1 [Homo sapiens]
            GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 150  QEDPKVWSVQEQTPWYPAS*TC*TFPSLLP*ENSEVF 260
            +EDP  WSV    P+YP       FP L P  + E F
Sbjct: 1645 KEDPTTWSVAPGMPFYP-------FPPLPPVSHGEFF 1674


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 207  SWLDTTEFALALTTPWDLLGLFYILINQAATRCPYY 100
            SWLD    A  L   +D++G+   ++++  T+C  +
Sbjct: 5055 SWLDEINSATDLQEAFDIVGVLADVLSEGVTQCDQF 5090


>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 227 RERSAGLAGWIPRSLLLH*PHLGIFL 150
           +ERS  + GW P+ L+L  P +G FL
Sbjct: 347 KERSLLIKGWSPQMLILSHPAVGGFL 372


>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
           RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1226

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -2

Query: 279 WQRTPP*TLHCFLTVAKTGTFSRSSWLDTTEFALALTTPWDL 154
           + R P  +    L  A       S WLDT    ++  +PWD+
Sbjct: 198 YSRRPQPSPSPMLAAASPDARLASPWLDTPRSTMSSASPWDM 239


>At5g07110.1 68418.m00810 prenylated rab acceptor (PRA1) family
           protein weak similarity to prenylated Rab acceptor 1
           (PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
           PF03208: Prenylated rab acceptor (PRA1)
          Length = 216

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
 Frame = -1

Query: 166 TLGSSWAFLHTDKPSGHPVSL--LFFFDL----ILCCTTVVDIAIT 47
           +L +SW FL+  +P+  P+ +    F DL    ILC +TVV + +T
Sbjct: 104 SLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMT 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,815,226
Number of Sequences: 28952
Number of extensions: 182177
Number of successful extensions: 489
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)