Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0764.Seq
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    31   0.18 
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    30   0.31 
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    30   0.31 
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    29   0.96 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.96 
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    28   1.3  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    28   1.3  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   2.2  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    27   3.9  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    27   3.9  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   5.1  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   5.1  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   6.8  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   9.0  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   9.0  

>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 93  DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKK 272
           ++A ++K     EV  T P  S V++ P+KK +      +E  T    E +P E   PK 
Sbjct: 440 ESAEEQKPSKEPEVKPTTPSASKVEE-PSKKRDEDNHQKEETVTQPKREKTPVEKSFPKP 498

Query: 273 AT 278
           A+
Sbjct: 499 AS 500



 Score = 29.9 bits (64), Expect = 0.42
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 108 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP 248
           K+E  P E +  +P  SPV  S   K E +E   K   +DEAP+ +P
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAP 530


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +3

Query: 126 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVM----PKKATMHLRT 293
           E+  + EP E+P   S   KVE A +         AP  + A        P KA   L T
Sbjct: 94  EDEVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDEPPKALEVLHT 153

Query: 294 VMPQKRKRLV 323
           ++ QK K+ +
Sbjct: 154 LVAQKLKKSI 163


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +3

Query: 105 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKKATMH 284
           D+   A +E +  E  E    +   +  E  E   ++  T+E P+++P E +  K +T  
Sbjct: 46  DEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLKQKASTAS 105

Query: 285 LRTVMP 302
              V+P
Sbjct: 106 FYDVVP 111


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 144 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKKAT-MHLRTVMPQKRK 314
           +P  +PVKKS  K    A    + N +  +   S A    PK A+   L    P++RK
Sbjct: 195 QPAAAPVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPAVLPEGKPRRRK 252


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 22/72 (30%), Positives = 37/72 (51%)
 Frame = -3

Query: 295  TVLRCIVAFFGITISAGESSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGAT 116
            TV+   V     ++ +  SS  SSV  +  LLS++  F +  F TG S  S+  + +G+ 
Sbjct: 3484 TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-TSENGSV 3542

Query: 115  SFLSTAASAIVV 80
            S  S  +S+ V+
Sbjct: 3543 SSSSLVSSSPVL 3554


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 126 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKK 272
           +E  +   KES  K++PA+K +   +   ENGT+E  +  PA+    +K
Sbjct: 53  DETAAPSEKESLEKQAPARKTKGKRAT--ENGTEEGKK--PAKRTRKRK 97


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 114 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 254
           ++ PE+    + +  PVKK P+KK + A++N  E   DE   +   E
Sbjct: 58  DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEE 103


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 81  TTMADAAVDKKEVAPEEVTSTEPKESPVKK-SPAKKVEAAESNGKENGTDEAPEDSPAE 254
           ++  D +  K +   +  +S EP +  VKK   +KK E + S  +   +    E S +E
Sbjct: 44  SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSE 102


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 117 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEM 257
           VAP  +TS +     V KS    VE+     +++ T   PED P+ M
Sbjct: 288 VAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPSPM 333


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +3

Query: 90  ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPK 269
           A A + + +V+  + +  +PK++PV  S A +   A  N  +  T E       ++   K
Sbjct: 213 AAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQ---ASENASDKKTKEKKSSGKQKIASKK 269

Query: 270 K 272
           K
Sbjct: 270 K 270


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -2

Query: 350 HQEPQISSS-HQSLSFLWHHRSQMHRCFLRHHHFSRRIFW 234
           H E  +S   HQ L  +W    Q   CF  +  F RR+ +
Sbjct: 435 HSEKMMSPVFHQFLDCVWQIMDQFPNCFEFNERFLRRLLY 474


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +3

Query: 144  EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE-----MVMPKK 272
            E +ESP+K  P KK      +  E  T +    SP E     MV PK+
Sbjct: 892  ETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVESKINLMVAPKR 939


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 99  AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED 242
           ++D+   +P  ++S   K SP  K+ +K  ++A +      TDE P D
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSD 633


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 307 FCGITVLRCIVAFFGITISAGESSGASSVPFSLPLLSAASTFLAGDFLT 161
           F G  V+  +VAF G +     ++  +SVP    +L   S+F AG+FL+
Sbjct: 277 FVGCLVI-FVVAFSGFSAYFLLNAYQASVPIYTSMLYNYSSFQAGNFLS 324


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 93  DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 251
           + A  KK  A E   +   + +  K++ AK++EAA+     N   + P+D+PA
Sbjct: 80  EQAAKKKAKAAEAEAAAAARAAAAKEAEAKRLEAAK-----NIVLKEPKDAPA 127


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 75  TLTTMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP 248
           T+T   D AV     AP E  S  PK+  VK + A   +AA+       + +  E+ P
Sbjct: 106 TITIDQDIAVIDTSAAPPEGGSAGPKKDEVKTADA---DAAKDLSTPQDSSKPIEEKP 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,116
Number of Sequences: 5004
Number of extensions: 49704
Number of successful extensions: 206
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)