Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0764.Seq
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 33 0.21
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.28
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r... 32 0.36
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 32 0.48
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 30 1.5
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa... 30 1.5
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 30 1.5
At2g25670.2 68415.m03077 expressed protein 30 1.5
At2g25670.1 68415.m03076 expressed protein 30 1.5
At4g07380.1 68417.m01133 hypothetical protein 30 1.9
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 30 1.9
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 30 1.9
At5g21430.1 68418.m02535 DNAJ heat shock N-terminal domain-conta... 29 2.6
At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related... 29 2.6
At1g56660.1 68414.m06516 expressed protein 29 2.6
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 29 3.4
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 29 3.4
At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me... 29 3.4
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me... 29 3.4
At4g31880.1 68417.m04531 expressed protein 29 4.5
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono... 29 4.5
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 29 4.5
At1g01490.1 68414.m00065 heavy-metal-associated domain-containin... 29 4.5
At5g61610.1 68418.m07731 glycine-rich protein / oleosin similar ... 28 5.9
At5g03380.1 68418.m00291 heavy-metal-associated domain-containin... 28 5.9
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 28 5.9
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 28 5.9
At4g39040.2 68417.m05530 expressed protein contains PF01985: Unc... 28 7.8
At4g39040.1 68417.m05529 expressed protein contains PF01985: Unc... 28 7.8
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +3
Query: 105 DKKEVAPE--EVTSTEPK--ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEM 257
+K E APE EV S P E +++PA AAE N EN ++E E++P E+
Sbjct: 67 EKSESAPESTEVASEAPAAAEDNAEETPA----AAEENNDENASEEVAEETPDEI 117
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +3
Query: 108 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKKA 275
KKE + E+ +S+E + P KK PA K+ + + D++ EDS E KKA
Sbjct: 153 KKESSSEDDSSSE--DEPAKK-PAAKIAKPAAKDSSSSDDDSDEDSEDEKPATKKA 205
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3
Query: 126 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 254
++V + KE VKK P KKVE+++ + E+ +E + PA+
Sbjct: 42 KDVIAAVQKEKAVKKVP-KKVESSDDSDSESEEEEKAKKVPAK 83
>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 93 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMV-MPK 269
D V+ K E+ + E + + A + ES+ K +EA +D PAEM+ MPK
Sbjct: 738 DQTVEHKPPVNLELKTVEEDSMEPENALASESGPLESSSKTQNQEEATKDGPAEMLDMPK 797
Query: 270 KATM 281
+ ++
Sbjct: 798 EDSL 801
>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 93 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMV-MPK 269
D V+ K E+ + E + + A + ES+ K +EA +D PAEM+ MPK
Sbjct: 738 DQTVEHKPPVNLELKTVEEDSMEPENALASENGPLESSSKTQNQEEATKDGPAEMLDMPK 797
Query: 270 KATM 281
+ ++
Sbjct: 798 EDSL 801
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 108 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKK 272
+K P+++ S E P K+ K + + ++NG DEA E S + V+PK+
Sbjct: 169 RKASLPKKIDSKPEPELPPKEPKIKNLFDLNNEPEDNGLDEA-EGSTFQEVVPKE 222
>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +3
Query: 78 LTTMADAAVDKKEVAPEEVTSTEPKESPVKKSPA--------KKVEAAESNGKENGTDEA 233
LTT + V + EV P EP+E PV +P VEAA S+ +N T +
Sbjct: 140 LTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVETRLNLTVEAASSSSSDNKTVVS 199
Query: 234 P 236
P
Sbjct: 200 P 200
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 254 NGDAEESNDASENGDATEKKET 319
+GD+ E+N+ASE+GD E K T
Sbjct: 280 DGDSVEANNASEDGDTVEDKNT 301
>At2g25670.2 68415.m03077 expressed protein
Length = 318
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = +3
Query: 108 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKKATMHL 287
K+ A E +++ K+ K+ K+ + ++N + DEA P E P +
Sbjct: 209 KENAAGGESKASKKKKKKDKQKEVKESQEQQANNNADAVDEAAGSEPTEEESPIDVKERI 268
Query: 288 RTVMPQKRKR 317
+ + K+K+
Sbjct: 269 KKLASMKKKK 278
>At2g25670.1 68415.m03076 expressed protein
Length = 318
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = +3
Query: 108 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKKATMHL 287
K+ A E +++ K+ K+ K+ + ++N + DEA P E P +
Sbjct: 209 KENAAGGESKASKKKKKKDKQKEVKESQEQQANNNADAVDEAAGSEPTEEESPIDVKERI 268
Query: 288 RTVMPQKRKR 317
+ + K+K+
Sbjct: 269 KKLASMKKKK 278
>At4g07380.1 68417.m01133 hypothetical protein
Length = 168
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 105 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEA-PEDSPAEMVMPKK 272
D + + EEV+ E + K K E ++NG++NGT+ PE + E+ K+
Sbjct: 85 DPSQQSNEEVSQEEVMVNEETKEVDKMEEETQTNGEDNGTEVINPEIADVELPAKKR 141
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 117 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDS 245
V PEE++ ++PK+S A+K+E N KE T E P D+
Sbjct: 302 VNPEEISESKPKQS--VDEVARKIEGFHIN-KEGKTAEKPSDA 341
>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to
N2,N2-dimethylguanosine tRNA methyltransferase [Homo
sapiens] GI:11066198; contains Pfam profile PF02005:
N2,N2-dimethylguanosine tRNA methyltransferase
Length = 599
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = +3
Query: 108 KKEVAPEEVTSTEPKESPVKK--SPAKKVEAAESNGKENGTDE-APEDSPAEMVM-PKKA 275
K+E + T P ++K S A K E NG NG E A ED P+ + P K
Sbjct: 51 KQEHEAKSSKRTRPASKVIEKDASEASKEETPSENGMNNGDHEVASEDGPSSVSKDPAKT 110
Query: 276 TMHLRTVMPQKRKRL 320
T P+ K L
Sbjct: 111 TERFAPREPKPPKVL 125
>At5g21430.1 68418.m02535 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile: PF00226
DnaJ domain;
Length = 218
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 156 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 251
SP + S EA G DEAP++SP+
Sbjct: 44 SPARNSSEVSAEAETEGGSSTAVDEAPKESPS 75
>At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related
contains Pfam PF04504: Protein of unknown function,
DUF573; similar to storekeeper protein GI:14268476
[Solanum tuberosum]
Length = 345
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 153 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKKAT 278
ESP KS KK AAES ++G +E +SPA K+A+
Sbjct: 76 ESPAVKS-GKKEGAAESPAVKSGNNEGATESPAVKSGKKRAS 116
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +3
Query: 105 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE-MVMPKK 272
+K E PEE KE + +K E E +GK+N E E E PKK
Sbjct: 140 EKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKK 196
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 141 TEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVM 263
T+PK P + PA++ ++ + + DE+ ED +E M
Sbjct: 53 TKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGM 93
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 141 TEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVM 263
T+PK P + PA++ ++ + + DE+ ED +E M
Sbjct: 136 TKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGM 176
>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +3
Query: 93 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKK 272
D AV V S+ KE ++ +KK+E AE +EN +E + + KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 273 ATMHLRTVMPQK 308
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +3
Query: 93 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKK 272
D AV V S+ KE ++ +KK+E AE +EN +E + + KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 273 ATMHLRTVMPQK 308
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Frame = +3
Query: 96 AAVDKKEVAPEEVTSTEPKESPVKKSPAK-----------KVEAAESNGKENGTDEAPED 242
A+ KKE + TS++ K PVK PAK S KE+ ++ E+
Sbjct: 785 ASSKKKEEPSKATTSSKSKSGPVKSVPAKSKTGKGKAKSGSASTPASKAKESASESESEE 844
Query: 243 SPAEMVMPKKA 275
+P E KA
Sbjct: 845 TPKEPEPATKA 855
>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
splice site at exon 6
Length = 612
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 108 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMP 266
+K A + + + E KK KK + E T+E PE S E+ P
Sbjct: 495 EKAAAKAAIRAQKEAEKKEKKEQEKKAKKKTGGNTETETEEVPEASEEEIEAP 547
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 93 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES-NGKENGTDEAPE 239
+A + V P+ + +P+E+ ++ A++ EAAE+ G+E G + E
Sbjct: 416 EALTVTETVEPQVMEEVQPEETAAPQTEAQQTEAAETQGGQEEGQEREGE 465
>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 177
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 87 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 239
M D + PE+ EPK+ + P K+ EA + GK+ G EAP+
Sbjct: 62 MTDIVLVGPAKEPEKEKKEEPKKEGGGEPPKKEGEAPKEEGKKEG--EAPK 110
>At5g61610.1 68418.m07731 glycine-rich protein / oleosin similar to
variable surface lipoprotein Vsp422-3 (GI:15384285)
[Mycoplasma bovis]; similar to glycine-rich protein
atGRP-6, Arabidopsis thaliana, PIR:T49893
Length = 225
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +3
Query: 126 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEMVMPKKATMHLRTVMP 302
E+ E ++ P K PA+ + + + G ED P + P + H+ MP
Sbjct: 150 EDKLPAEEEKPPQKDKPAEGHKPPQKDKPAEGDKPVEEDKPPQKDKPAEGDKHVEEDMP 208
>At5g03380.1 68418.m00291 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP2
[GI:4097545]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 392
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 87 MADAAVDKKEVAPEEVTSTEPKESPV-KKSPAKKVEAA-ESNG--KENGTDEAPEDSPAE 254
++ A KKE P E K SP ++ PA+K AA E G KE E E +
Sbjct: 89 VSTVAPPKKETPPSS-GGAEKKPSPAAEEKPAEKKPAAVEKPGEKKEEKKKEEGEKKASP 147
Query: 255 MVMPKKATMHLRT 293
PK++T+ L+T
Sbjct: 148 PPPPKESTVVLKT 160
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 105 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEA 233
DKKE EEV S PK KK +K EAA E+ +++
Sbjct: 504 DKKEEVIEEVAS--PKSEKKKKKKSKDTEAAVDAEDESAAEKS 544
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 120 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDS 245
A + TS E K+S KS + +GK+ EAPE++
Sbjct: 215 ATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENN 256
>At4g39040.2 68417.m05530 expressed protein contains PF01985:
Uncharacterised protein family
Length = 280
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 260 DAEESNDASENGDATEKKETGVKRKS 337
D+E S + SE GD EK E K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146
>At4g39040.1 68417.m05529 expressed protein contains PF01985:
Uncharacterised protein family
Length = 296
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 260 DAEESNDASENGDATEKKETGVKRKS 337
D+E S + SE GD EK E K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,804,253
Number of Sequences: 28952
Number of extensions: 256076
Number of successful extensions: 968
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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