Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0762.Seq
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.57 
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    28   1.3  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   3.0  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    26   5.3  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   9.2  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   9.2  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   9.2  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
 Frame = -1

Query: 452 DYAV-DKKAIDTXRVRHCSAIAWSL*HRKPACRKISPSTAKPTGLHC*MAVAWRLAIRNM 276
           DYA+ D+KA+     R+C  + W   +  P+ +    S  K +G+   M V   LA R  
Sbjct: 265 DYAIYDEKAVGIESGRYCETVGWVSINGIPSFK----SLVKLSGISSLMGVESYLAER-- 318

Query: 275 FPLAFMQRSTAKTGRMGYALSETGPSGRCSWGLALVERNEAPLGIVYGS 129
             L F+  S  ++ +  ++  ++  S   S+  + ++ N  P G ++ S
Sbjct: 319 --LRFIGESIRRSSQQIFSSLQSAKSASVSFSRSYIDWN--PEGFMFHS 363


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 151 GASLRSTSARPHEHLPLGPVSERAYPMRPVFAVLLCINAS 270
           GAS+      P   +P G +S +A        V+LC+ AS
Sbjct: 309 GASMSGDLKAPSRSIPKGTISSQATTFLLYLLVILCVGAS 348


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 551 FSDVTVLTTGNRAIVVIPDHRLAR 622
           FS +TVLT  NRA  + PDH   R
Sbjct: 288 FSRLTVLTFSNRAF-IFPDHTFPR 310


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 122 LRQNRRQCPEALRYVRPAPGPTNIFRWGQFRRERI 226
           LR+  +  PE  R  R    PTN+ +  + +RE I
Sbjct: 368 LRERYKHIPEIRRIARHRHLPTNVKKAAEIKREEI 402


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 194 RCSWGLALVERN 159
           +C WGL L+ERN
Sbjct: 164 KCGWGLPLLERN 175


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 465 IGRNKQIRRRTRFNLRAXVDDEALHL 542
           + +NKQIRR    +  A V D  LHL
Sbjct: 145 VDQNKQIRRGRSRSFSAKVSDPNLHL 170


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 417 TRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAV 292
           T   LLGNSL++     S+  DF    K + +S L   R+A+
Sbjct: 616 TFHALLGNSLLLEHNNVSIPDDFDSKLKLSSSSGLTCVRIAI 657


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,159
Number of Sequences: 5004
Number of extensions: 61511
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)