Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0762.Seq
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL032627-2|CAB63353.2|  521|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U13070-16|AAC46648.2|  185|Caenorhabditis elegans Hypothetical p...    27   8.6  
AF038618-3|AAB92073.1|  572|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical
           protein R08A2.5 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 256 KEALQKLGAWDTLSPKLAPAEDVRGAWRWSNVTKRL 149
           K+AL  +       P+  P +D++G W  + ++KR+
Sbjct: 71  KKALDTIAQMMNTCPRGFPIQDIKGLWHVTRISKRM 106


>AL032627-2|CAB63353.2|  521|Caenorhabditis elegans Hypothetical
           protein Y41C4A.2 protein.
          Length = 521

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 287 IRNMFPLAFMQRSTAKTG--RMGYALSETGPSGRCSWGLALVERNEAPLGIVYGSDA 123
           +RN+  + F+  S +KT   R  +AL +  P G C    ALV    AP G     DA
Sbjct: 145 LRNLGAIPFVTTSISKTPHPRNPWAL-DCSPGGLCGGEAALVADGGAPFGFAPDLDA 200


>Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical
           protein W04G3.4 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -1

Query: 176 ALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSH--KKVEYPVAVVEGHNNATVK 15
           +++ RN  P+ ++Y      SKG++++  + +       +   V V++ HNN T+K
Sbjct: 454 SIIMRNRVPIEVLY------SKGMRILLYYCQSDMTVSNIHSYVLVIQNHNNFTIK 503


>U13070-16|AAC46648.2|  185|Caenorhabditis elegans Hypothetical
           protein F01F1.13 protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 301 PGGWRSGTCSRWHLCKEALQK 239
           PGGW   T S+W  C+E ++K
Sbjct: 55  PGGW--STWSKWSKCREGIRK 73


>AF038618-3|AAB92073.1|  572|Caenorhabditis elegans Hypothetical
           protein F42G8.7 protein.
          Length = 572

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 3   IIKCFHCRIVMPFHNSNRIFHFFM*IFREGGNH 101
           I++ +HC IV+  HN N IF F   +F +  NH
Sbjct: 334 IVEFWHCIIVLEIHNLN-IFQFVADLFND--NH 363


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
            protein C44E4.1a protein.
          Length = 2712

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 435  FINRIIHPFLIGRNKQIRRRTRFNLRAXV 521
            FI +II  FLIGR++Q+R      LR+ +
Sbjct: 1057 FIEKIIKRFLIGRDEQLRWTLHGMLRSVI 1085


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
            protein C44E4.1c protein.
          Length = 2710

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 435  FINRIIHPFLIGRNKQIRRRTRFNLRAXV 521
            FI +II  FLIGR++Q+R      LR+ +
Sbjct: 1057 FIEKIIKRFLIGRDEQLRWTLHGMLRSVI 1085


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,530,585
Number of Sequences: 27780
Number of extensions: 379828
Number of successful extensions: 1028
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)