Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0761.Seq
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    28   1.7  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    27   2.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.1  

>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
            Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 402  SRFHGRPRPAEVAQKELGILGVEIPAEVVPIEAGVL*RSGQL--SSRN*RYTDFQLRQHR 575
            SR  GR    E A + LG +G+ IP       +G L R  QL     +       LR+HR
Sbjct: 900  SRLWGRDVALE-AWETLGSIGLIIPVHPSTNVSGALSRQCQLWQPEVDINVVSVGLREHR 958

Query: 576  LLPRHIF 596
             LP H +
Sbjct: 959  RLPSHYY 965


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 148 LNAPFSYLIIFVVTFVLHSRSSRLLNPMNSSLVTQFLIE 32
           +  P +  +  V  F+  SRSS++  PMN  + TQF++E
Sbjct: 383 MRRPKTICLTVVSRFLRKSRSSQI--PMNVDISTQFIVE 419


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -3

Query: 499 ASIGTTSAGISTPNIPSSF*ATSA 428
           +SI T S+GIS+ +IPS+F + S+
Sbjct: 555 SSITTISSGISSSSIPSTFSSVSS 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,214
Number of Sequences: 5004
Number of extensions: 62832
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)