Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0761.Seq
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313...    31   1.0  
01_06_1027 + 33912773-33912816,33913245-33913401,33913492-339135...    31   1.3  
02_04_0109 + 19812544-19814474,19814574-19814607                       30   2.3  
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409...    29   4.1  
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283...    29   4.1  
11_06_0764 + 27108979-27110018,27110176-27112270                       28   9.4  

>08_02_0819 -
           21529913-21530064,21531016-21531082,21531284-21531373,
           21531506-21531622,21532026-21532145,21532313-21533581
          Length = 604

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 306 RSKGNVEAVIVDPVEPPSKRTRAKTKKNSEVRSRFHGRPRPAEVA 440
           ++ G V+  +  P+ PP K   A   +  EV SRF     PA  A
Sbjct: 10  KAAGTVDCALRQPLVPPEKNIAAPAGRRREVASRFKSGGTPAPQA 54


>01_06_1027 +
           33912773-33912816,33913245-33913401,33913492-33913589,
           33913680-33913775,33914422-33914681,33914778-33915088,
           33915154-33915297,33915452-33915589,33915674-33915721,
           33916328-33916408,33916705-33916864,33917411-33917532
          Length = 552

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 348 EPPSKRTRAKTKKNSEVRSRFHGRPRPAEVAQKELGILGVEIPAE 482
           E PSKR+RAK K  +E  S  + +     V +K+L + G  +  E
Sbjct: 183 ETPSKRSRAKNKGTAEESSGANVKQSKTSVQKKKLVVQGASVDHE 227


>02_04_0109 + 19812544-19814474,19814574-19814607
          Length = 654

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +2

Query: 368 SCEDQKELRSTQQISRTPETGRGRSKRARNIRGRNTSRGRANRSRST 508
           S ED++  R ++ I +TP+  R RS R++  RG + S  R+  S ST
Sbjct: 353 SREDKRHTRCSESIPQTPKESRKRS-RSKRSRGSSLSSDRST-SHST 397


>09_03_0218 +
           13539481-13540082,13540171-13540276,13540645-13540960,
           13541187-13541263,13541269-13541895,13542783-13543112,
           13543442-13543747,13543824-13543896,13544004-13544089,
           13544219-13544396,13545311-13545756
          Length = 1048

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 428 GRGRSKRARNIRGRNTSRGRA-NRSRS 505
           GRGR +R   +RGR   RGR   R RS
Sbjct: 52  GRGRGRRGGAVRGRGRGRGRCRGRGRS 78


>04_03_1028 -
           21827961-21827972,21828018-21828112,21828286-21828361,
           21828921-21829037,21829532-21829621,21830011-21830056,
           21831407-21831502,21831599-21832008
          Length = 313

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 392 RSTQQISRTPETGRGRSKRARNIRGRNTS 478
           RS++  SR+P  GR RS+     RGR+ S
Sbjct: 62  RSSRSRSRSPRRGRSRSRSRSRSRGRSAS 90


>11_06_0764 + 27108979-27110018,27110176-27112270
          Length = 1044

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 353 AIKKNSCEDQKELRSTQQISRTPETGRG--RSKRARNIRGRNTSRGRANRSRSTVEVGA- 523
           A+ +N  ED+       Q+S+  E G     S R  N R    S   ++R  +T E G  
Sbjct: 241 AVSQNYDEDEVLRSILNQVSKQEEAGGSTESSSRDENTREPQGSSSTSSREENTAESGTK 300

Query: 524 TLIEKLK 544
            ++ KLK
Sbjct: 301 RMLNKLK 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,281,747
Number of Sequences: 37544
Number of extensions: 361280
Number of successful extensions: 1037
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)