Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0761.Seq
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 31   0.77 
SB_30851| Best HMM Match : C2 (HMM E-Value=0.0042)                     30   2.3  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_22759| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     29   4.1  
SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)                  29   5.4  
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)                       28   7.2  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_49252| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 21/49 (42%), Positives = 26/49 (53%)
 Frame = +2

Query: 359 KKNSCEDQKELRSTQQISRTPETGRGRSKRARNIRGRNTSRGRANRSRS 505
           +K S   +K LRS ++ SRTP   R RS R R+   R  S     RSRS
Sbjct: 198 RKRSRSPRKMLRSPRKRSRTPRK-RSRSPRKRSRSPRKGSHTPKKRSRS 245



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +2

Query: 359 KKNSCEDQKELRSTQQISRTPETG----RGRSKRARNIRGRNTSRGRANRSRS 505
           +K S   +K  RS ++ SR+P  G    + RS+  R    R+  R R +RSRS
Sbjct: 212 RKRSRTPRKRSRSPRKRSRSPRKGSHTPKKRSRSPRRNSQRHKERSRYHRSRS 264


>SB_30851| Best HMM Match : C2 (HMM E-Value=0.0042)
          Length = 889

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 315 GNVEAVIVDPVEPPSKRTRAKTKKNSEVRSRFHGRPRPAEVAQKEL 452
           G    V+V     PSKR+R KTK      + FH R     V++KEL
Sbjct: 788 GIAAEVVVHASILPSKRSRFKTKAKPITNAAFHERWVVRNVSKKEL 833


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 463  GSKYQQRSCQ*KPEYCRGRGNSHRETEDIPT-FSLGNTDYYPDTSSLRKHYSLPNP 627
            G++  Q SCQ   +       SH   +  PT F   +T Y PDT+ +    + P P
Sbjct: 2432 GNQTSQESCQTGYQNSETCQASHNRHQTRPTSFQPSHTGYQPDTTPIASRATRPQP 2487


>SB_22759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
 Frame = +3

Query: 189 GESIINQRKPRYEHG*VNKRPRYVQVVKETVPKNNKRVTRSKGNV----EAVIVDPVEPP 356
           G + I +RK       +N++  +V   KE + +NNK   +   NV    E  IVDPV   
Sbjct: 138 GVTDIKRRKEMETETKINQK--FVNTKKEDIKENNKNYKKEFNNVELHKELQIVDPV--M 193

Query: 357 SKRTRAK-TKKNSEVRSRF--HGRPRPAEVAQKE 449
           ++R     T+K +     F  HGRP    +A+++
Sbjct: 194 ARRIHPNDTRKIARSLQVFEQHGRPHSELLAEQQ 227


>SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
 Frame = +3

Query: 285 KNNKRVTRSKGNVEAVIVDPVEPPSKRTRA-----KTKKNSEVRSRFHGRPRPAE----V 437
           K N+  T +K   +   V+  E   K+ +A     K K N E+++  +G P+P+E     
Sbjct: 172 KENRDATPTKVITDVKAVNSSENKEKKQQAAPPPTKPKPNREIKAAENGEPKPSENDAKR 231

Query: 438 AQKELGILGVEIPAEVV 488
            +K++ I  V++ AEVV
Sbjct: 232 GEKDVPISNVKV-AEVV 247


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
 Frame = +2

Query: 413 RTPETGRGRSKRARNI-RGR-----NTSRGRA----NRSRSTVEVGATLIEKLKIY 550
           R P T RG++KR  N  RG+     NT RGRA    N  R   EV  T   K K Y
Sbjct: 571 RYPNTKRGKAKRYPNTKRGKAKRYPNTKRGRAKRYPNTKRGKAEVSYTKRGKAKRY 626


>SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)
          Length = 561

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 276 TVPKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNS 392
           T P  N+  TRS  ++ +       PPS   R KT K++
Sbjct: 272 TAPPRNEDTTRSSKSIFSKCSSATTPPSNNARPKTTKST 310


>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
          Length = 553

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 526 SCPDLYSTPASIGTTSAGISTPNIPSSF*ATS 431
           SC  + STP S  +  A I +P  P SF A S
Sbjct: 158 SCDSMPSTPKSEASPQAPIKSPETPPSFSAAS 189


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +2

Query: 347  RAAIKKNSCEDQKELRSTQQISRTPETGRGRSKRARNIRGRNTSRGRANRSRSTVEVGAT 526
            RA  K      +K+LRS + ++    T  G  K+ +NI+    S   +  +R  +E G  
Sbjct: 2685 RAYKKAKRSSKEKDLRSYRHVADMTFTANGIYKQLKNIQPNKASGPDSVPARILIEAGGE 2744

Query: 527  LIEKLKI 547
            L   L +
Sbjct: 2745 LAPLLAL 2751


>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +2

Query: 380 QKELRSTQQISRTPETGRGRSKRARNIRGRNTSRGRANRSRSTVEVGATLIEKLKIYRL 556
           +K + +   +S TP++ RGR +RA+        + R  R+R+  +  AT     +I+R+
Sbjct: 388 RKLIETESVVSETPKSVRGRQQRAKTTTTTTKPKQRTTRTRN-AKAKATKAPGNEIHRV 445


>SB_49252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 97  HSRSSRLLNPMNSSLVTQFLIENYLHLYILD 5
           H + SRL  P      + F   N  HLY+LD
Sbjct: 39  HWQGSRLYKPTTGGHASYFTASNSCHLYLLD 69


>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 276 TVPKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNS 392
           T P  N+  TRS  ++ +       PPS   R KT K++
Sbjct: 674 TAPPRNEDTTRSGKSIFSKCSSATTPPSNNARPKTTKST 712


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,831,497
Number of Sequences: 59808
Number of extensions: 442948
Number of successful extensions: 1337
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)